RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LRRC36Q1X8D7 754 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 ADGRD1Q6QNK2 874 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 CEP128Q6ZU80 1094 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 SPATA6LQ8N4H0 392 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 UTP4Q969X6 686 aaKnown RBP13.84□□□□□ -0.19
VPS54-203ENST00000409558 MAML3Q96JK9 1138 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 CSPG4P5Q96PW8 444 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 CAB39LQ9H9S4 337 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 CYP3A43Q9HB55 503 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 KRT82Q9NSB4 513 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.84□□□□□ -0.194e-6■■□□□ 12.5
VPS54-203ENST00000409558 EURLQ9NYK6 297 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 TNS1Q9HBL0 1735 aaKnown RBP13.84□□□□□ -0.19
VPS54-203ENST00000409558 FAM72CH0Y354 149 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 ZMPSTE24O75844 475 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 OAS1P00973 400 aaKnown RBP13.84□□□□□ -0.19
VPS54-203ENST00000409558 BST1Q10588 318 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 FAM72AQ5TYM5 149 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 FAM72DQ6L9T8 149 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 TLK2Q86UE8 772 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 FAM72BQ86X60 149 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 TXLNGQ9NUQ3 528 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 SLC5A4Q9NY91 659 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 DRICH1Q6PGQ1 229 aaPredicted RBP13.83□□□□□ -0.19
VPS54-203ENST00000409558 DSTYKQ6XUX3 929 aa13.83□□□□□ -0.19
VPS54-203ENST00000409558 CXorf38Q8TB03 319 aa13.83□□□□□ -0.19
VPS54-203ENST00000409558 SGIP1Q9BQI5 828 aa13.83□□□□□ -0.19
VPS54-203ENST00000409558 PRDM12Q9H4Q4 367 aa13.83□□□□□ -0.19
VPS54-203ENST00000409558 DTLQ9NZJ0 730 aa13.83□□□□□ -0.19
VPS54-203ENST00000409558 RLFQ13129 1914 aa13.83□□□□□ -0.19
VPS54-203ENST00000409558 BAG2O95816 211 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 AVPR1AP37288 418 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 TKTL1P51854 596 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 AQP5P55064 265 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 DOCK1Q14185 1865 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 CXCL17Q6UXB2 119 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 OSTM1Q86WC4 334 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 DOCK3Q8IZD9 2030 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 RIBC1Q8N443 379 aaPredicted RBP13.83□□□□□ -0.2
VPS54-203ENST00000409558 BANPQ8N9N5 519 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 NMUR2Q9GZQ4 415 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.83□□□□□ -0.28e-6■■■□□ 18.7
VPS54-203ENST00000409558 LOXHD1Q8IVV2 1947 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 RNF103O00237 685 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 DNAJC6O75061 913 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 ATICP31939 592 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 GLRBP48167 497 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 DEUP1Q05D60 604 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 DLG2Q15700 870 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 VWA5B1Q5TIE3 1220 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 OLFML2BQ68BL8 750 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 MAMDC4Q6UXC1 1216 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 SLC26A11Q86WA9 606 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 OR52K1Q8NGK4 314 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 SLC35F5Q8WV83 523 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 DDIT4Q9NX09 232 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 PRKAG3Q9UGI9 489 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 ATXN2Q99700 1313 aaKnown RBP13.83□□□□□ -0.2
VPS54-203ENST00000409558 ZWINTO95229 277 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 VAV1P15498 845 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 L1CAMP32004 1257 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 PCK1P35558 622 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 SLC8A3P57103 927 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 FBXO27Q8NI29 283 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 C10orf82Q8WW14 230 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 L3MBTL3Q96JM7 780 aaPredicted RBP13.83□□□□□ -0.2
VPS54-203ENST00000409558 ULBP1Q9BZM6 244 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 MAN1C1Q9NR34 630 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 TEX264Q9Y6I9 313 aa13.83□□□□□ -0.2
VPS54-203ENST00000409558 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.83□□□□□ -0.2
VPS54-203ENST00000409558 LTBP3Q9NS15 1303 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 DCTN3O75935 186 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 SNRPAP09012 282 aaKnown RBP13.82□□□□□ -0.2
VPS54-203ENST00000409558 UBAP2LQ14157 1087 aaKnown RBP13.82□□□□□ -0.2
VPS54-203ENST00000409558 ZNF792Q3KQV3 632 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 SDHAF4Q5VUM1 108 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 GBP7Q8N8V2 638 aaPredicted RBP13.82□□□□□ -0.2
VPS54-203ENST00000409558 FAM161BQ96MY7 647 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 EBF4Q9BQW3 602 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 RPS6KL1Q9Y6S9 549 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 MYBPHLA2RUH7 354 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 SLC15A5A6NIM6 579 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 NRP1O14786 923 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 TCEA3O75764 348 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 NCF2P19878 526 aaPredicted RBP13.82□□□□□ -0.2
VPS54-203ENST00000409558 SLC8A1P32418 973 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 KCNJ11Q14654 390 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 TAF11Q15544 211 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 ANKRD20A2Q5SQ80 823 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 ANKRD20A1Q5TYW2 823 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 FAM13CQ8NE31 585 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 FNIP1Q8TF40 1166 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 PPP1R12CQ9BZL4 782 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 DDX43Q9NXZ2 648 aaKnown RBP13.82□□□□□ -0.2
VPS54-203ENST00000409558 CFAP73A6NFT4 308 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 ARHGAP42A6NI28 874 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 F8W810 466 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 AMHP03971 560 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 BST2Q10589 180 aaKnown RBP13.82□□□□□ -0.2
VPS54-203ENST00000409558 CLNKQ7Z7G1 428 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms