RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 COILP38432 576 aaPredicted RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 VPS41P49754 854 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 CREMQ03060 361 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 PPP2R5EQ16537 467 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 DPYSL2Q16555 572 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 FAM182AQ5T1J6 154 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 FBXO38Q6PIJ6 1188 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 NPNTQ6UXI9 565 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 DNAJB7Q7Z6W7 309 aaPredicted RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 ZC3H18Q86VM9 953 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 GSPT2Q8IYD1 628 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 SCML4Q8N228 414 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 MRPL43Q8N983 215 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 NETO2Q8NC67 525 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 ACTL9Q8TC94 416 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 LRRN4Q8WUT4 740 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 ARNTL2Q8WYA1 636 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 GDAP1L1Q96MZ0 367 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 KLHL5Q96PQ7 755 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 RNF157Q96PX1 679 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 TGS1Q96RS0 853 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 DCLK3Q9C098 648 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 DPH5Q9H2P9 285 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 SLITRK6Q9H5Y7 841 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 CWC15Q9P013 229 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 MARCH2Q9P0N8 246 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 FNIP2Q9P278 1114 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 FBXW11Q9UKB1 542 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 DNPEPQ9ULA0 475 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 YBX2Q9Y2T7 364 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 UTP11Q9Y3A2 253 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 RWDD3Q9Y3V2 267 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 SLC12A8A0AV02 714 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 FAM72CH0Y354 149 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 I6L893 689 aaPredicted RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 EEF2KO00418 725 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 APOL1O14791 398 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 IRAK2O43187 625 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 ENDOD1O94919 500 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 ECEL1O95672 775 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 IFNB1P01574 187 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 C8AP07357 584 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 PECAM1P16284 738 aaPredicted RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 AMPD1P23109 780 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 CCR1P32246 355 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 CXCR3P49682 368 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 PSEN1P49768 467 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 RBM10P98175 930 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 OTUD4Q01804 1114 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 GPM6BQ13491 265 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 BYSLQ13895 437 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 TFDP2Q14188 446 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 HLTFQ14527 1009 aaKnown RBP eCLIP3.85□□□□□ -1.791e-8■■□□□ 13
RTN4-208ENST00000404909 GLE1Q53GS7 698 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 FAM72AQ5TYM5 149 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 FAM72DQ6L9T8 149 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 RWDD4Q6NW29 188 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 PRUNE1Q86TP1 453 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 FAM72BQ86X60 149 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 DDX42Q86XP3 938 aaKnown RBP eCLIP3.85□□□□□ -1.799e-7■■□□□ 12.1
RTN4-208ENST00000404909 TCEAL8Q8IYN2 117 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 KREMEN2Q8NCW0 462 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 PCDH19Q8TAB3 1148 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 P3H4Q92791 437 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 ZBTB9Q96C00 473 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 SERPINB11Q96P15 392 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 CSPG4P5Q96PW8 444 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 TMEM121Q9BTD3 319 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 SMOC2Q9H3U7 446 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 LRRC19Q9H756 370 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 RXFP1Q9HBX9 757 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 TRPC7Q9HCX4 862 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.85□□□□□ -1.79
RTN4-208ENST00000404909 ARGLU1Q9NWB6 273 aaPredicted RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 MTMR10Q9NXD2 777 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 IL37Q9NZH6 218 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 TRPM5Q9NZQ8 1165 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 OR12D3Q9UGF7 316 aa3.85□□□□□ -1.79
RTN4-208ENST00000404909 XPO7Q9UIA9 1087 aaKnown RBP3.85□□□□□ -1.79
RTN4-208ENST00000404909 FAM92AA1XBS5 289 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 TARSL2A2RTX5 802 aaKnown RBP3.84□□□□□ -1.79
RTN4-208ENST00000404909 H0YGN5 161 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 CCL16O15467 120 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 RFPL2O75678 378 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 HMGA1P17096 107 aaKnown RBP3.84□□□□□ -1.79
RTN4-208ENST00000404909 PTPN7P35236 360 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 ARSEP51690 589 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 TBX4P57082 545 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 TPI1P60174 286 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 CCNG2Q16589 344 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 ZNF697Q5TEC3 545 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 PPP2R2DQ66LE6 453 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 BBS12Q6ZW61 710 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 BNIPLQ7Z465 357 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 JAMLQ86YT9 394 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 IFT20Q8IY31 132 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 TAB3Q8N5C8 712 aaPredicted RBP3.84□□□□□ -1.79
RTN4-208ENST00000404909 PQLC3Q8N755 202 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 PLD5Q8N7P1 536 aa3.84□□□□□ -1.79
RTN4-208ENST00000404909 ATL2Q8NHH9 583 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms