RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 TBC1D5Q92609 795 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 AGAP3Q96P47 875 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 CATSPER2Q96P56 530 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 LLPHQ9BRT6 129 aaKnown RBP8.4□□□□□ -1.06
LIMS1-203ENST00000393310 BRD8Q9H0E9 1235 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 SCML1Q9UN30 329 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 AGAP1Q9UPQ3 857 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 YIPF1Q9Y548 306 aa8.4□□□□□ -1.06
LIMS1-203ENST00000393310 SERPINB4P48594 390 aa8.4□□□□□ -1.07
LIMS1-203ENST00000393310 DHX9Q08211 1270 aaKnown RBP8.4□□□□□ -1.07
LIMS1-203ENST00000393310 BRAPQ7Z569 592 aa8.4□□□□□ -1.07
LIMS1-203ENST00000393310 NLRP14Q86W24 1093 aa8.4□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D10CQ8IV04 446 aa8.4□□□□□ -1.07
LIMS1-203ENST00000393310 FAM174AQ8TBP5 190 aa8.4□□□□□ -1.07
LIMS1-203ENST00000393310 AUTS2Q8WXX7 1259 aa8.4□□□□□ -1.07
LIMS1-203ENST00000393310 CEP295NLQ96MC4 621 aa8.4□□□□□ -1.07
LIMS1-203ENST00000393310 PCDHGC5Q9Y5F6 944 aa8.4□□□□□ -1.07
LIMS1-203ENST00000393310 BNIP3LO60238 219 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 GAS8O95995 478 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 IRF1P10914 325 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 CYP3A5P20815 502 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 ACAT1P24752 427 aaKnown RBP8.39□□□□□ -1.07
LIMS1-203ENST00000393310 WEE1P30291 646 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 KAT2BQ92831 832 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 FAM149B1Q96BN6 582 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 MYADMQ96S97 322 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 BBS2Q9BXC9 721 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 BHMT2Q9H2M3 363 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 ADNPQ9H2P0 1102 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 HACD3Q9P035 362 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 AGO2Q9UKV8 859 aaKnown RBP8.39□□□□□ -1.07
LIMS1-203ENST00000393310 TMEM98Q9Y2Y6 226 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 MBLAC1A4D2B0 266 aaPredicted RBP8.39□□□□□ -1.07
LIMS1-203ENST00000393310 FSBPO95073 299 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 PROS1P07225 676 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 SLURP2P0DP57 97 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 SCNN1BP51168 640 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 MTF1Q14872 753 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 MYBPC3Q14896 1274 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 BBS9Q3SYG4 887 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 PPP6R3Q5H9R7 873 aaPredicted RBP8.39□□□□□ -1.07
LIMS1-203ENST00000393310 FBXW10Q5XX13 1052 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 ABHD15Q6UXT9 468 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 DENND5BQ6ZUT9 1274 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 PRICKLE2Q7Z3G6 844 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 SGMS1Q86VZ5 419 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 GLIS3Q8NEA6 775 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 NRBF2Q96F24 287 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 NUP58Q9BVL2 599 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 MAGEF1Q9HAY2 307 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 C12orf4Q9NQ89 552 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 DNAJC17Q9NVM6 304 aaKnown RBP8.39□□□□□ -1.07
LIMS1-203ENST00000393310 STK17AQ9UEE5 414 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 WBP11Q9Y2W2 641 aaKnown RBP8.39□□□□□ -1.07
LIMS1-203ENST00000393310 DERAQ9Y315 318 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 CBY1Q9Y3M2 126 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 LTBP1Q14766 1721 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 SEC24DO94855 1032 aaPredicted RBP8.39□□□□□ -1.07
LIMS1-203ENST00000393310 IL33O95760 270 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 HLA-EP13747 358 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 PLA2G4AP47712 749 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 ERVFC1P60507 584 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 BMT2Q1RMZ1 405 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 ZC3H12BQ5HYM0 836 aaKnown RBP8.39□□□□□ -1.07
LIMS1-203ENST00000393310 KIAA1211LQ6NV74 962 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 CORO6Q6QEF8 472 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 KIAA1958Q8N8K9 716 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 DDHD1Q8NEL9 900 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 OSCP1Q8WVF1 389 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 ALKBH8Q96BT7 664 aaKnown RBP8.39□□□□□ -1.07
LIMS1-203ENST00000393310 OLFM3Q96PB7 478 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 SNX9Q9Y5X1 595 aa8.39□□□□□ -1.07
LIMS1-203ENST00000393310 NEDD4P46934 1319 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 SYCE3A1L190 88 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 C19orf67A6NJJ6 358 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 SNHG28P0DPA3 235 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 GRM5P41594 1212 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 DNA2P51530 1060 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 RUNX1T1Q06455 604 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 STX3Q13277 289 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 SLC22A8Q8TCC7 542 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 RBM41Q96IZ5 413 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 ATP6V1G3Q96LB4 118 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 CENPKQ9BS16 269 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 ACTR5Q9H9F9 607 aaPredicted RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 LRRC4CQ9HCJ2 640 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 PARVAQ9NVD7 372 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 GALNT8Q9NY28 637 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 TNFSF13BQ9Y275 285 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 SRCAPQ6ZRS2 3230 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 CAPN5O15484 640 aaPredicted RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 NOL3O60936 208 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 MICAL2O94851 1124 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 CHRNA1P02708 482 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 ATP5C1P36542 298 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 ACTN3Q08043 901 aaPredicted RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 DRP2Q13474 957 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 NFE2L1Q14494 772 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 SLC5A9Q2M3M2 681 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 SLC39A12Q504Y0 691 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms