RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 TTI2Q6NXR4 508 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 TMEM270Q6UE05 265 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 FMNL3Q8IVF7 1028 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 ARHGAP18Q8N392 663 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 SORCS1Q8WY21 1168 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 LRRC4Q9HBW1 653 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 TMEM9BQ9NQ34 198 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 HESX1Q9UBX0 185 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 STRIP2Q9ULQ0 834 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 CTNND2Q9UQB3 1225 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 STON1Q9Y6Q2 735 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 FRYQ5TBA9 3013 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 PPP1R3GB7ZBB8 358 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 TSPAN3O60637 253 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 BRD2P25440 801 aaKnown RBP17.35■□□□□ 0.37
PTPRK-208ENST00000392449 PMLP29590 882 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 IL12RB1P42701 662 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 NOVA1P51513 510 aaKnown RBP17.35■□□□□ 0.37
PTPRK-208ENST00000392449 STX17P56962 302 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 PKDCCQ504Y2 493 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 BSPRYQ5W0U4 402 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 SYT12Q8IV01 421 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 ARHGEF19Q8IW93 802 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 NELFBQ8WX92 580 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 DHTKD1Q96HY7 919 aaPredicted RBP17.35■□□□□ 0.37
PTPRK-208ENST00000392449 MRGPRX1Q96LB2 322 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 IPO9Q96P70 1041 aaKnown RBP17.35■□□□□ 0.37
PTPRK-208ENST00000392449 DCLK3Q9C098 648 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 FAM124BQ9H5Z6 455 aaPredicted RBP17.35■□□□□ 0.37
PTPRK-208ENST00000392449 HOOK1Q9UJC3 728 aaKnown RBP17.35■□□□□ 0.37
PTPRK-208ENST00000392449 PILRBQ9UKJ0 227 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 ZNF510Q9Y2H8 683 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 PCDHB4Q9Y5E5 795 aa17.35■□□□□ 0.37
PTPRK-208ENST00000392449 ASCC3Q8N3C0 2202 aaKnown RBP17.34■□□□□ 0.37
PTPRK-208ENST00000392449 CFIP05156 583 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 VDRP11473 427 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 CHKAP35790 457 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 STIM1Q13586 685 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 BYSLQ13895 437 aaKnown RBP17.34■□□□□ 0.37
PTPRK-208ENST00000392449 FUT11Q495W5 492 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 SH3PXD2AQ5TCZ1 1133 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 TMEM215Q68D42 235 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 PMF1Q6P1K2 205 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 KIAA1324Q6UXG2 1013 aaKnown RBP17.34■□□□□ 0.37
PTPRK-208ENST00000392449 RRAGAQ7L523 313 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 CACUL1Q86Y37 369 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 SLC41A1Q8IVJ1 513 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 SIX6OS1Q8N1H7 587 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 PPM1KQ8N3J5 372 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 LMO3Q8TAP4 145 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 CLEC4CQ8WTT0 213 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 DDI1Q8WTU0 396 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 PIWIL1Q96J94 861 aaKnown RBP17.34■□□□□ 0.37
PTPRK-208ENST00000392449 CEP63Q96MT8 703 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 NT5C1BQ96P26 610 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 SLC27A6Q9Y2P4 619 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 KMT2BQ9UMN6 2715 aaPredicted RBP17.34■□□□□ 0.37
PTPRK-208ENST00000392449 CACNA1BQ00975 2339 aa17.34■□□□□ 0.37
PTPRK-208ENST00000392449 AP5Z1O43299 807 aa17.33■□□□□ 0.37
PTPRK-208ENST00000392449 ENGP17813 658 aa17.33■□□□□ 0.37
PTPRK-208ENST00000392449 TBXAS1P24557 533 aaPredicted RBP17.33■□□□□ 0.37
PTPRK-208ENST00000392449 SGSHP51688 502 aa17.33■□□□□ 0.37
PTPRK-208ENST00000392449 YWHAEP62258 255 aaKnown RBP17.33■□□□□ 0.37
PTPRK-208ENST00000392449 ZNF33AQ06730 810 aa17.33■□□□□ 0.37
PTPRK-208ENST00000392449 TRIP4Q15650 581 aaPredicted RBP17.33■□□□□ 0.37
PTPRK-208ENST00000392449 OR2I1PQ8NGU4 316 aa17.33■□□□□ 0.37
PTPRK-208ENST00000392449 PLD4Q96BZ4 506 aa17.33■□□□□ 0.37
PTPRK-208ENST00000392449 METTL14Q9HCE5 456 aaKnown RBP17.33■□□□□ 0.37
PTPRK-208ENST00000392449 EVLQ9UI08 416 aaPredicted RBP17.33■□□□□ 0.37
PTPRK-208ENST00000392449 M0QYV0 167 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 KRT37O76014 449 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 SETSIPP0DME0 302 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 PRKCHP24723 683 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 HOXD9P28356 352 aaPredicted RBP17.32■□□□□ 0.36
PTPRK-208ENST00000392449 DAOAP59103 153 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 MORC3Q14149 939 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 DAB2IPQ5VWQ8 1189 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 LCLAT1Q6UWP7 414 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 ANKS1BQ7Z6G8 1248 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 FAM217AQ8IXS0 508 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 CPXM2Q8N436 756 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 RNF139Q8WU17 664 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 KCTD13Q8WZ19 329 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 HSPA12BQ96MM6 686 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 NUSAP1Q9BXS6 441 aaKnown RBP17.32■□□□□ 0.36
PTPRK-208ENST00000392449 CIPCQ9C0C6 399 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 MKRN2Q9H000 416 aaKnown RBP17.32■□□□□ 0.36
PTPRK-208ENST00000392449 THAP10Q9P2Z0 257 aaPredicted RBP17.32■□□□□ 0.36
PTPRK-208ENST00000392449 ANGPTL2Q9UKU9 493 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.32■□□□□ 0.36
PTPRK-208ENST00000392449 PCDH15Q96QU1 1955 aa17.32■□□□□ 0.36
PTPRK-208ENST00000392449 ZBTB24O43167 697 aaPredicted RBP17.31■□□□□ 0.36
PTPRK-208ENST00000392449 CYBBP04839 570 aa17.31■□□□□ 0.36
PTPRK-208ENST00000392449 ZNF234Q14588 700 aa17.31■□□□□ 0.36
PTPRK-208ENST00000392449 PEAR1Q5VY43 1037 aaPredicted RBP17.31■□□□□ 0.36
PTPRK-208ENST00000392449 SLC23A3Q6PIS1 610 aa17.31■□□□□ 0.36
PTPRK-208ENST00000392449 SLC36A4Q6YBV0 504 aa17.31■□□□□ 0.36
PTPRK-208ENST00000392449 TRIML1Q8N9V2 468 aa17.31■□□□□ 0.36
PTPRK-208ENST00000392449 RBBP8NLQ8NC74 664 aaPredicted RBP17.31■□□□□ 0.36
PTPRK-208ENST00000392449 DEFB124Q8NES8 71 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms