RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 FASP25445 335 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 ITGA1P56199 1179 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 PLEKHA7Q6IQ23 1121 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 IKBIPQ70UQ0 350 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CYP3A43Q9HB55 503 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 SLC24A2Q9UI40 661 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CPA3P15088 417 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 SKIV2L2P42285 1042 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 OTUD4Q01804 1114 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 MPP3Q13368 585 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 ARMC4Q5T2S8 1044 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 TRPC4APQ8TEL6 797 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 LRRC39Q96DD0 335 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 TMEM79Q9BSE2 394 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 DPY30Q9C005 99 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 UBDO15205 165 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 BST2Q10589 180 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 PAFAH2Q99487 392 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 DCLRE1BQ9H816 532 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 SENP2Q9HC62 589 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CHORDC1Q9UHD1 332 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 ITGA11Q9UKX5 1188 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 POLR1DQ9Y2S0 133 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 RNF17Q9BXT8 1623 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CYP7B1O75881 506 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 ATG7O95352 703 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CYP11B1P15538 503 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CSHL1Q14406 222 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 OASLQ15646 514 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 PKN1Q16512 942 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 ARMC3Q5W041 872 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 BNIPLQ7Z465 357 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 SLC26A11Q86WA9 606 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 LRRC7Q96NW7 1537 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CCNT2O60583 730 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 GMPSP49915 693 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 NDUFA5Q16718 116 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 PLEKHH3Q7Z736 793 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CACTIN-AS1Q8N1I8 211 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 TMEM132CQ8N3T6 1108 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 TMEM176AQ96HP8 235 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CPB2Q96IY4 423 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 S100A13Q99584 98 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 FBXO44Q9H4M3 255 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 MROH8Q9H579 483 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 RHBDL2Q9NX52 303 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 GALNT8Q9NY28 637 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CCDC154A6NI56 674 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 PPP1R3GB7ZBB8 358 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 PDE9AO76083 593 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 SUPT20HL2P0C7V6 817 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CRABP2P29373 138 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 MCL1Q07820 350 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CYP24A1Q07973 514 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 TBCELQ5QJ74 424 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CYP20A1Q6UW02 462 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 ZBTB49Q6ZSB9 765 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 NECAB2Q7Z6G3 386 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 UTP15Q8TED0 518 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 HNRNPLLQ8WVV9 542 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 AHCYL2Q96HN2 611 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 KANSL3Q9P2N6 904 aa13.12□□□□□ -0.31
CCDC88C-204ENST00000389857 CBX4O00257 560 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 MSH4O15457 936 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 KLHL18O94889 574 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 CLPTM1O96005 669 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 PPIL2Q13356 520 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 RUSC1Q9BVN2 902 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 TMEM39BQ9GZU3 492 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 RRN3Q9NYV6 651 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 DNALI1O14645 258 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 BAIAP3O94812 1187 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 UQCRBP14927 111 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 ERMARDQ5T6L9 678 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 C11orf63Q6NUN7 778 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 CYB5D1Q6P9G0 228 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 TRMT11Q7Z4G4 463 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 SH3BP4Q9P0V3 963 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 IL6P05231 212 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 CYP2A6P11509 494 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 SLC26A2P50443 739 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 EZH2Q15910 746 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 PMF1Q6P1K2 205 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 C1QTNF7Q9BXJ2 289 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 TMEM51Q9NW97 253 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 ADPRHL2Q9NX46 363 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 VAV3Q9UKW4 847 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 A0A0A6YYK5 440 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 NKRFO15226 690 aaKnown RBP eCLIP13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 BIRC5O15392 142 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 FGFR2P21802 821 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 SPANXN3Q5MJ09 141 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 PRR5LQ6MZQ0 368 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 SETD9Q8NE22 299 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 AGBL3Q8NEM8 1001 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 FIG4Q92562 907 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 TMEM159Q96B96 161 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 ATG4CQ96DT6 458 aa13.11□□□□□ -0.31
CCDC88C-204ENST00000389857 UGT2B28Q9BY64 529 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms