RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CHUKO15111 745 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 MFSD11O43934 449 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 RFPL1O75677 317 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 NEBLO76041 1014 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 FYNP06241 537 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 WSCD1Q658N2 575 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 DENND5BQ6ZUT9 1274 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 BNIPLQ7Z465 357 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 N4BP2L2Q92802 583 aaPredicted RBP13.85□□□□□ -0.19
CCDC3-202ENST00000378839 WNT8BQ93098 351 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 PARK7Q99497 189 aaKnown RBP13.85□□□□□ -0.19
CCDC3-202ENST00000378839 MECRQ9BV79 373 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 SNX25Q9H3E2 840 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 MANSC1Q9H8J5 431 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.85□□□□□ -0.19
CCDC3-202ENST00000378839 COX16Q9P0S2 106 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 HAO1Q9UJM8 370 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 DCTN4Q9UJW0 460 aa13.85□□□□□ -0.19
CCDC3-202ENST00000378839 CBX6O95503 412 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 MYL3P08590 195 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 BGNP21810 368 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 OLIG2Q13516 323 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 CTC1Q2NKJ3 1217 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 SLC7A6OSQ96CW6 309 aaPredicted RBP13.84□□□□□ -0.19
CCDC3-202ENST00000378839 APOPT1Q96IL0 206 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 ZNF395Q9H8N7 513 aaPredicted RBP13.84□□□□□ -0.19
CCDC3-202ENST00000378839 L3MBTL1Q9Y468 752 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 USH1CQ9Y6N9 552 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 HTTP42858 3142 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 BPTFQ12830 3046 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 ZNF487B1APH4 448 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 FAM72CH0Y354 149 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 NRP1O14786 923 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 TM9SF1O15321 606 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 INHBAP08476 426 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 CHRM1P11229 460 aaPredicted RBP13.84□□□□□ -0.19
CCDC3-202ENST00000378839 MATKP42679 507 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 TAF6P49848 677 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 HSF5Q4G112 596 aaPredicted RBP13.84□□□□□ -0.19
CCDC3-202ENST00000378839 FAM72AQ5TYM5 149 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 FAM72DQ6L9T8 149 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 ARCQ7LC44 396 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 GPRIN1Q7Z2K8 1008 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 SLC26A11Q86WA9 606 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 FAM72BQ86X60 149 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 CTAGE3PQ8IX95 158 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 GBP7Q8N8V2 638 aaPredicted RBP13.84□□□□□ -0.19
CCDC3-202ENST00000378839 TBC1D31Q96DN5 1066 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 KLC2Q9H0B6 622 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 ARHGEF4Q9NR80 690 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 STK38LQ9Y2H1 464 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 TSC2P49815 1807 aa13.84□□□□□ -0.19
CCDC3-202ENST00000378839 CFAP69A5D8W1 941 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 CD4P01730 458 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 ALADP13716 330 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 MAP2K5Q13163 448 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 SMAD1Q15797 465 aaKnown RBP13.83□□□□□ -0.19
CCDC3-202ENST00000378839 DCAF6Q58WW2 860 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 MCUQ8NE86 351 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 NT5C3BQ969T7 300 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 VPS11Q9H270 941 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 CRTAC1Q9NQ79 661 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 MIOSQ9NXC5 875 aa13.83□□□□□ -0.19
CCDC3-202ENST00000378839 IQANK1A0A1B0GTG1 560 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 CYB561D2O14569 222 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 XPO1O14980 1071 aaKnown RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 APOEP02649 317 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 SULT1E1P49888 294 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 SLC25A52Q3SY17 297 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 ACCSLQ4AC99 568 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 TAF1BQ53T94 588 aaPredicted RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 CLEC20AQ6ZU45 233 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 NLRP9Q7RTR0 991 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 C3orf58Q8NDZ4 430 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 ADAM32Q8TC27 787 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 AGAP11Q8TF27 550 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 TTC17Q96AE7 1141 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 PPP1R10Q96QC0 940 aaKnown RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 LRRC37BQ96QE4 947 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 SRPK1Q96SB4 655 aaKnown RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 HNRNPABQ99729 332 aaKnown RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 PLCD4Q9BRC7 762 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 DUSP16Q9BY84 665 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 PIGVQ9NUD9 493 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 TIMM13Q9Y5L4 95 aaPredicted RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 CELF2O95319 508 aaKnown RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 ATP2A2P16615 1042 aaKnown RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 PRKD1Q15139 912 aaPredicted RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 NBPF20Q3BBV1 942 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 CST9Q5W186 159 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 MTDHQ86UE4 582 aaKnown RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 CDKL3Q8IVW4 592 aaPredicted RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 HSFY1Q96LI6 401 aa13.83□□□□□ -0.2
CCDC3-202ENST00000378839 EBNA1BP2Q99848 306 aaKnown RBP13.83□□□□□ -0.2
CCDC3-202ENST00000378839 ZNF236Q9UL36 1845 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 WARSP23381 471 aaKnown RBP13.82□□□□□ -0.2
CCDC3-202ENST00000378839 CDC25CP30307 473 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 SEMA5AQ13591 1074 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 ANKRD20A2Q5SQ80 823 aa13.82□□□□□ -0.2
CCDC3-202ENST00000378839 ANKRD20A1Q5TYW2 823 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms