RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SLC8A1P32418 973 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 PNPLA4P41247 253 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 ACADSBP45954 432 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 SV2CQ496J9 727 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 ACCSLQ4AC99 568 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 XKR4Q5GH76 650 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 RFWD2Q8NHY2 731 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 TACO1Q9BSH4 297 aaKnown RBP20.02■□□□□ 0.8
COL9A3-201ENST00000343916 HAO1Q9UJM8 370 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 UNCXA6NJT0 531 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 ZNF487B1APH4 448 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 CELF2O95319 508 aaKnown RBP20.02■□□□□ 0.8
COL9A3-201ENST00000343916 APOEP02649 317 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 RPSAP08865 295 aaKnown RBP20.02■□□□□ 0.8
COL9A3-201ENST00000343916 CSH1P0DML2 217 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 CSH2P0DML3 217 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 SLC18A2Q05940 514 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 TTC39BQ5VTQ0 682 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-201ENST00000343916 WSCD1Q658N2 575 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 ZNF449Q6P9G9 518 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 TNIP3Q96KP6 325 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 SIGLEC10Q96LC7 697 aa20.02■□□□□ 0.8
COL9A3-201ENST00000343916 QKIQ96PU8 341 aaKnown RBP eCLIP20.02■□□□□ 0.8
COL9A3-201ENST00000343916 ZNF638Q14966 1978 aaKnown RBP20.01■□□□□ 0.79
COL9A3-201ENST00000343916 PTGESO14684 152 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 XPO1O14980 1071 aaKnown RBP20.01■□□□□ 0.79
COL9A3-201ENST00000343916 MFSD11O43934 449 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 ALADP13716 330 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 ALDH3A1P30838 453 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 MAGEA3P43357 314 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 NR2C2P49116 596 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 CRADDP78560 199 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 MAP2K5Q13163 448 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 MORN1Q5T089 497 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 OTUD1Q5VV17 481 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-201ENST00000343916 SYPL2Q5VXT5 272 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 ARCQ7LC44 396 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 STRADAQ7RTN6 431 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 NLRP9Q7RTR0 991 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 SRPK1Q96SB4 655 aaKnown RBP20.01■□□□□ 0.79
COL9A3-201ENST00000343916 FRMD8Q9BZ67 464 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-201ENST00000343916 FZD10Q9ULW2 581 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 HAS3O00219 553 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 XPOTO43592 962 aaKnown RBP20.01■□□□□ 0.79
COL9A3-201ENST00000343916 CBX6O95503 412 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 DHRS4L1P0CG22 281 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 NEFHP12036 1026 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 ZFXP17010 805 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-201ENST00000343916 CYP2B6P20813 491 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 BGNP21810 368 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 PRKCHP24723 683 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 ARL4AP40617 200 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 NME3Q13232 169 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 SLC25A52Q3SY17 297 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 EFHC1Q5JVL4 640 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 KIAA0319Q5VV43 1072 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 FYB2Q5VWT5 728 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 HFE2Q6ZVN8 426 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 PAQR9Q6ZVX9 377 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 LIMS2Q7Z4I7 341 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 MCUQ8NE86 351 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 HTR3CQ8WXA8 447 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 DUSP16Q9BY84 665 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 ARHGEF4Q9NR80 690 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 KANSL3Q9P2N6 904 aa20.01■□□□□ 0.79
COL9A3-201ENST00000343916 A0A0G2JND7 137 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 CYB561D2O14569 222 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 CREB3O43889 395 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 DCTN3O75935 186 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 SCNN1AP37088 669 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 AFF1P51825 1210 aaKnown RBP20■□□□□ 0.79
COL9A3-201ENST00000343916 UNC5BQ8IZJ1 945 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 TFB1MQ8WVM0 346 aaKnown RBP20■□□□□ 0.79
COL9A3-201ENST00000343916 TSSK1BQ9BXA7 367 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 SLC13A1Q9BZW2 595 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 GTF2IRD1Q9UHL9 959 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 SUFUQ9UMX1 484 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 COPEO14579 308 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 TAF1BQ53T94 588 aaPredicted RBP20■□□□□ 0.79
COL9A3-201ENST00000343916 ANKRD20A2Q5SQ80 823 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 ANKRD20A1Q5TYW2 823 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 ANKRD20A3Q5VUR7 823 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 MTDHQ86UE4 582 aaKnown RBP20■□□□□ 0.79
COL9A3-201ENST00000343916 TP53INP2Q8IXH6 220 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 STAMBPL1Q96FJ0 436 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 OLFM3Q96PB7 478 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 HNRNPABQ99729 332 aaKnown RBP20■□□□□ 0.79
COL9A3-201ENST00000343916 EBNA1BP2Q99848 306 aaKnown RBP20■□□□□ 0.79
COL9A3-201ENST00000343916 MECRQ9BV79 373 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 L3MBTL1Q9Y468 752 aa20■□□□□ 0.79
COL9A3-201ENST00000343916 M0QYT0 321 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 KRT37O76014 449 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 SNRPAP09012 282 aaKnown RBP19.99■□□□□ 0.79
COL9A3-201ENST00000343916 T-ENOLP0DO92 83 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 RARBP10826 455 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 NPR3P17342 541 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 SKIV2L2P42285 1042 aaKnown RBP19.99■□□□□ 0.79
COL9A3-201ENST00000343916 CRYBB1P53674 252 aaPredicted RBP19.99■□□□□ 0.79
COL9A3-201ENST00000343916 MAP3K7CLP57077 242 aa19.99■□□□□ 0.79
COL9A3-201ENST00000343916 MRPS5P82675 430 aaKnown RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms