RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SULT1E1P49888 294 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 VCPP55072 806 aaKnown RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 AMPD2Q01433 879 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 RING1Q06587 406 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 TBX2Q13207 712 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 PON2Q15165 354 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 TSR1Q2NL82 804 aaKnown RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 NUGGCQ68CJ6 796 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 C1orf228Q6PIY5 440 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 TPGS1Q6ZTW0 290 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 DNAAF5Q86Y56 855 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 UNC45BQ8IWX7 931 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 MCOLN2Q8IZK6 566 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 PJA1Q8NG27 643 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 CHFRQ96EP1 664 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 FCRL2Q96LA5 508 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 LRFN3Q9BTN0 628 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 ABHD10Q9NUJ1 306 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 ZNHIT6Q9NWK9 470 aaKnown RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 ARHGAP20Q9P2F6 1191 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 TMEM59LQ9UK28 342 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 STAP1Q9ULZ2 295 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 MRPS17Q9Y2R5 130 aaKnown RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 AKR1B15C9JRZ8 316 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 MOCS2O96007 188 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 APOEP02649 317 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 TARSP26639 723 aaKnown RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 GBP1P32455 592 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 FLT3P36888 993 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 GSCP56915 257 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 NME3Q13232 169 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 ANO4Q32M45 955 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 NAIF1Q69YI7 327 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 ASTLQ6HA08 431 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 DNAJC24Q6P3W2 148 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 TMEM25Q86YD3 366 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 CNGA4Q8IV77 575 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 EMC1Q8N766 993 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 C3orf20Q8ND61 904 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 SLC39A13Q96H72 371 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 SELENOOQ9BVL4 669 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 RRN3Q9NYV6 651 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 ADAMTS1Q9UHI8 967 aa16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 MTF2Q9Y483 593 aaPredicted RBP16.54■□□□□ 0.24
CCDC28A-201ENST00000332797 FAM170BA6NMN3 283 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 M0QYT0 321 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 RTN2O75298 545 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 FTLP02792 175 aaPredicted RBP16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 KRT3P12035 628 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 GZMAP12544 262 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 AOC1P19801 751 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 CHKAP35790 457 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 EIF4A3P38919 411 aaKnown RBP16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 GAD2Q05329 585 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 ARID5BQ14865 1188 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 GAB4Q2WGN9 574 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 ZC3H12AQ5D1E8 599 aaKnown RBP16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 OTUD1Q5VV17 481 aaPredicted RBP16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 TRNP1Q6NT89 227 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 WDR59Q6PJI9 974 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 DRC7Q8IY82 874 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 JOSD2Q8TAC2 188 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 BHMTQ93088 406 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 RNF34Q969K3 372 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 TBCBQ99426 244 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 NPY6RQ99463 290 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 SIT1Q9Y3P8 196 aa16.53■□□□□ 0.24
CCDC28A-201ENST00000332797 NEDD8-MDP1E9PL57 170 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 TRDMT1O14717 391 aaKnown RBP16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 ATMINO43313 823 aaPredicted RBP16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 PI15O43692 258 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 LATS1O95835 1130 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 TFE3P19532 575 aaPredicted RBP16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 RRM1P23921 792 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 SLC11A2P49281 568 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 CLCN5P51795 746 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 SLC25A52Q3SY17 297 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 ARCQ7LC44 396 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 C12orf40Q86WS4 652 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 CCDC105Q8IYK2 499 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 CD101Q93033 1021 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 VCPIP1Q96JH7 1222 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 CFAP57Q96MR6 1250 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 NELL2Q99435 816 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 P2RY13Q9BPV8 354 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 BBS2Q9BXC9 721 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 ADAM33Q9BZ11 813 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 CALCOCO1Q9P1Z2 691 aa16.52■□□□□ 0.23
CCDC28A-201ENST00000332797 A0A087X0T9 212 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 HOXC11O43248 304 aaPredicted RBP16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 ACSL4O60488 711 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 TSPAN3O60637 253 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 DCNP07585 359 aaKnown RBP16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 FAM228BP0C875 321 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 TYRP14679 529 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 PDGFRAP16234 1089 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 CCR1P32246 355 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 OPRD1P41143 372 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 GALK1P51570 392 aa16.51■□□□□ 0.23
CCDC28A-201ENST00000332797 DEUP1Q05D60 604 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms