RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 MCF2P10911 925 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 DARSP14868 501 aaKnown RBP11.27□□□□□ -0.6
LSM3-201ENST00000306024 PCYT1AP49585 367 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 CDK16Q00536 496 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 MTM1Q13496 603 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 SLC27A1Q6PCB7 646 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 BRSK2Q8IWQ3 736 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 GIPC3Q8TF64 312 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 FAM81BQ96LP2 452 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 UNC93B1Q9H1C4 597 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 PCDH18Q9HCL0 1135 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 KRT82Q9NSB4 513 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 TAS2R14Q9NYV8 317 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 ANAPC7Q9UJX3 599 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 NEU2Q9Y3R4 380 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 ACTL7BQ9Y614 415 aa11.27□□□□□ -0.6
LSM3-201ENST00000306024 FUT4P22083 530 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 INHBCP55103 352 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 SNX17Q15036 470 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 SLC1A5Q15758 541 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 PABPC1LQ4VXU2 614 aaKnown RBP11.27□□□□□ -0.61
LSM3-201ENST00000306024 ZBTB41Q5SVQ8 909 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 TMEM270Q6UE05 265 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 THAP11Q96EK4 314 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 NUF2Q9BZD4 464 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 WWP1Q9H0M0 922 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 RNF19AQ9NV58 838 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 DMAC2Q9NW81 257 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 C15orf38-AP3S2A0A0A6YYH1 394 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 RPLP2P05387 115 aaKnown RBP11.27□□□□□ -0.61
LSM3-201ENST00000306024 UQCRBP14927 111 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 AKAP5P24588 427 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 PMLP29590 882 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 CRYBB1P53674 252 aaPredicted RBP11.27□□□□□ -0.61
LSM3-201ENST00000306024 NAA20P61599 178 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 MBTD1Q05BQ5 628 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 ARPINQ7Z6K5 226 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 TMEM110Q86TL2 294 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 ARID3BQ8IVW6 561 aaPredicted RBP11.27□□□□□ -0.61
LSM3-201ENST00000306024 KBTBD2Q8IY47 623 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 GALNT4Q8N4A0 578 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 CGRRF1Q99675 332 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 CCT7Q99832 543 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 SHCBP1LQ9BZQ2 653 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 TRMT13Q9NUP7 481 aaKnown RBP11.27□□□□□ -0.61
LSM3-201ENST00000306024 ATP11BQ9Y2G3 1177 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 ZNFX1Q9P2E3 1918 aaKnown RBP11.27□□□□□ -0.61
LSM3-201ENST00000306024 ZMYM2Q9UBW7 1377 aa11.27□□□□□ -0.61
LSM3-201ENST00000306024 SPATA31D3P0C874 917 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 PABPC4LP0CB38 370 aaKnown RBP11.26□□□□□ -0.61
LSM3-201ENST00000306024 VCLP18206 1134 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 PHEXP78562 749 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 BBS9Q3SYG4 887 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 EFHC1Q5JVL4 640 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 SPATA31D4Q6ZUB0 917 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 TRABD2AQ86V40 505 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 CRLF3Q8IUI8 442 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 OXNAD1Q96HP4 312 aaPredicted RBP11.26□□□□□ -0.61
LSM3-201ENST00000306024 HAUS8Q9BT25 410 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 GTF2IRD1Q9UHL9 959 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 C2orf71A6NGG8 1288 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 MEI4A8MW99 385 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 GPS1Q13098 491 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 BFSP2Q13515 415 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 SPOUT1Q5T280 376 aaKnown RBP11.26□□□□□ -0.61
LSM3-201ENST00000306024 GDF6Q6KF10 455 aaPredicted RBP11.26□□□□□ -0.61
LSM3-201ENST00000306024 SYDE1Q6ZW31 735 aaPredicted RBP11.26□□□□□ -0.61
LSM3-201ENST00000306024 DHDDSQ86SQ9 333 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 ATP11CQ8NB49 1132 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 PPP1R14BQ96C90 147 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 TIMMDC1Q9NPL8 285 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 CHST7Q9NS84 486 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 PRKAG2Q9UGJ0 569 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 IGKV6-21A0A0C4DH24 114 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 GTPBP10A4D1E9 387 aaKnown RBP11.26□□□□□ -0.61
LSM3-201ENST00000306024 MOXD2PA6NHM9 499 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 MCF2LO15068 1137 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 ITGB3P05106 788 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 MARSP56192 900 aaKnown RBP11.26□□□□□ -0.61
LSM3-201ENST00000306024 C1QTNF8P60827 252 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 LPIN1Q14693 890 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 NFIL3Q16649 462 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 RARS2Q5T160 578 aaKnown RBP11.26□□□□□ -0.61
LSM3-201ENST00000306024 NET1Q7Z628 596 aaPredicted RBP11.26□□□□□ -0.61
LSM3-201ENST00000306024 TCP10LQ8TDR4 215 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 FAM111AQ96PZ2 611 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 DRC3Q9H069 523 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 FZD8Q9H461 694 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 ITGB1BP2Q9UKP3 347 aa11.26□□□□□ -0.61
LSM3-201ENST00000306024 SGK1O00141 431 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 CYP26A1O43174 497 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 EIF2B2P49770 351 aaKnown RBP11.25□□□□□ -0.61
LSM3-201ENST00000306024 PSMC1P62191 440 aaKnown RBP11.25□□□□□ -0.61
LSM3-201ENST00000306024 SLC39A4Q6P5W5 647 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 ULK2Q8IYT8 1036 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 ZNF398Q8TD17 642 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 TRPV6Q9H1D0 765 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 ST3GAL5Q9UNP4 418 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 LACTBL1A8MY62 500 aa11.25□□□□□ -0.61
LSM3-201ENST00000306024 COPEO14579 308 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms