RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SETDB1Q15047 1291 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 EFHC1Q5JVL4 640 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 KIAA0319Q5VV43 1072 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 ARCQ7LC44 396 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 STRADAQ7RTN6 431 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 RFWD2Q8NHY2 731 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 FRMD8Q9BZ67 464 aaPredicted RBP20.76■□□□□ 0.91
VPS53-201ENST00000291074 ARHGEF3Q9NR81 526 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 PIH1D1Q9NWS0 290 aaKnown RBP20.76■□□□□ 0.91
VPS53-201ENST00000291074 FZD10Q9ULW2 581 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 NUMBLQ9Y6R0 609 aa20.76■□□□□ 0.91
VPS53-201ENST00000291074 CYB561D2O14569 222 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 UNC5CO95185 931 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 ZFXP17010 805 aaPredicted RBP20.75■□□□□ 0.91
VPS53-201ENST00000291074 MAGEA3P43357 314 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 CRYBB1P53674 252 aaPredicted RBP20.75■□□□□ 0.91
VPS53-201ENST00000291074 HFE2Q6ZVN8 426 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 MCUQ8NE86 351 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 TMEM237Q96Q45 408 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 DUSP16Q9BY84 665 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 VPS11Q9H270 941 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 ARHGEF4Q9NR80 690 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 C17orf102A2RUQ5 167 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 APOEP02649 317 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 RARBP10826 455 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 IBSPP21815 317 aaPredicted RBP20.75■□□□□ 0.91
VPS53-201ENST00000291074 NR2C2P49116 596 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 AFF1P51825 1210 aaKnown RBP20.75■□□□□ 0.91
VPS53-201ENST00000291074 GPR162Q16538 588 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 SLC25A52Q3SY17 297 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 MDH1BQ5I0G3 518 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 TTC39BQ5VTQ0 682 aaPredicted RBP20.75■□□□□ 0.91
VPS53-201ENST00000291074 SYPL2Q5VXT5 272 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 CEP57Q86XR8 500 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 HNRNPABQ99729 332 aaKnown RBP20.75■□□□□ 0.91
VPS53-201ENST00000291074 KANSL3Q9P2N6 904 aa20.75■□□□□ 0.91
VPS53-201ENST00000291074 DHRS4L1P0CG22 281 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 BGNP21810 368 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 WARSP23381 471 aaKnown RBP20.74■□□□□ 0.91
VPS53-201ENST00000291074 PRKCHP24723 683 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 ARL4AP40617 200 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 CPT1AP50416 773 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 NME3Q13232 169 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 E2F5Q15329 346 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 HTR3CQ8WXA8 447 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 OLFM3Q96PB7 478 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 GTF2IRD1Q9UHL9 959 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 NPR3P17342 541 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 PTPN1P18031 435 aaKnown RBP20.74■□□□□ 0.91
VPS53-201ENST00000291074 FKBP1BP68106 108 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 CRADDP78560 199 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 CBLBQ13191 982 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 CLEC20AQ6ZU45 233 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 NLRP9Q7RTR0 991 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 CTU1Q7Z7A3 348 aaKnown RBP20.74■□□□□ 0.91
VPS53-201ENST00000291074 TP53INP2Q8IXH6 220 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 UNC5BQ8IZJ1 945 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 TFB1MQ8WVM0 346 aaKnown RBP20.74■□□□□ 0.91
VPS53-201ENST00000291074 TBC1D31Q96DN5 1066 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 MED10Q9BTT4 135 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 HAO1Q9UJM8 370 aa20.74■□□□□ 0.91
VPS53-201ENST00000291074 CREB3O43889 395 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 DAB1O75553 588 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 DGKIO75912 1065 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 TPSB2P20231 275 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 MAP3K7CLP57077 242 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 MRPS5P82675 430 aaKnown RBP20.73■□□□□ 0.91
VPS53-201ENST00000291074 TPSAB1Q15661 275 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 ANKRD20A2Q5SQ80 823 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 ANKRD20A1Q5TYW2 823 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 ANKRD20A3Q5VUR7 823 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 FYB2Q5VWT5 728 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 TOP6BLQ8N6T0 577 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 RNF169Q8NCN4 708 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 ADAM32Q8TC27 787 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 SRPK1Q96SB4 655 aaKnown RBP20.73■□□□□ 0.91
VPS53-201ENST00000291074 EBNA1BP2Q99848 306 aaKnown RBP20.73■□□□□ 0.91
VPS53-201ENST00000291074 AP5M1Q9H0R1 490 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 TIMM13Q9Y5L4 95 aaPredicted RBP20.73■□□□□ 0.91
VPS53-201ENST00000291074 MYADML2A6NDP7 307 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 M0QYT0 321 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 ALDH3A1P30838 453 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 SEMA5AQ13591 1074 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 ZNF449Q6P9G9 518 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 RNF139Q8WU17 664 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 TSC2P49815 1807 aa20.73■□□□□ 0.91
VPS53-201ENST00000291074 COPEO14579 308 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 DCTN3O75935 186 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 SNRPAP09012 282 aaKnown RBP20.72■□□□□ 0.91
VPS53-201ENST00000291074 NEFHP12036 1026 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 SMAD1Q15797 465 aaKnown RBP20.72■□□□□ 0.91
VPS53-201ENST00000291074 PPP1R10Q96QC0 940 aaKnown RBP20.72■□□□□ 0.91
VPS53-201ENST00000291074 TSSK1BQ9BXA7 367 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 LRRC4Q9HBW1 653 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 KRT82Q9NSB4 513 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 SLC17A6Q9P2U8 582 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 NRP1O14786 923 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 KRT37O76014 449 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 CBX6O95503 412 aa20.72■□□□□ 0.91
VPS53-201ENST00000291074 MLH1P40692 756 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms