RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ANO7Q6IWH7 933 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CYP4Z1Q86W10 505 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 GCNAQ96QF7 691 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 EMILIN2Q9BXX0 1053 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 C12orf4Q9NQ89 552 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 IFT80Q9P2H3 777 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CFL2Q9Y281 166 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 NR2E3Q9Y5X4 410 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 UGT2B11O75310 529 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 MAPTP10636 758 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 COX4I1P13073 169 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PDGFRAP16234 1089 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TGM2P21980 687 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CRABP2P29373 138 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TMBIM6P55061 237 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 EIF5AP63241 154 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ADAM17P78536 824 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 GRTP1Q5TC63 336 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 C16orf62Q7Z3J2 963 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TMC2Q8TDI7 906 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 SH3KBP1Q96B97 665 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 DCUN1D1Q96GG9 259 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 NUDT12Q9BQG2 462 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CINPQ9BW66 212 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CNOT11Q9UKZ1 510 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CYP2D7A0A087X1C5 515 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ANKRD33BA6NCL7 494 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 SDR42E2A6NKP2 422 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ALOX12P18054 663 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 GSSP48637 474 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PDXDC2PQ6P474 469 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PIWIL4Q7Z3Z4 852 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ULK4Q96C45 1275 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 MND1Q9BWT6 205 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HEMGNQ9BXL5 484 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TMEM8AQ9HCN3 771 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CORO2BQ9UQ03 480 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FAM196BA6NMK8 535 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PIK3CGP48736 1102 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HIRAP54198 1017 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 GJA9P57773 515 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 LRRC41Q15345 812 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CCDC58Q4VC31 144 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PMF1Q6P1K2 205 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FAM160B2Q86V87 743 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 DDIASQ8IXT1 998 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 C15orf40Q8WUR7 153 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 MAGEB10Q96LZ2 347 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 MNTQ99583 582 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 C11orf70Q9BRQ4 267 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CPNE5Q9HCH3 593 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 DDX43Q9NXZ2 648 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ERAP1Q9NZ08 941 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 DNAJC16Q9Y2G8 782 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PRMT5O14744 637 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ZBTB5O15062 677 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 IL18RAPO95256 599 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 IL32P24001 234 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CCNCP24863 283 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FLT3P36888 993 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 EFNA5P52803 228 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TRIM28Q13263 835 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 AARS2Q5JTZ9 985 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 KATNAL2Q8IYT4 538 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CNTD1Q8N815 330 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TTC29Q8NA56 475 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 RDM1Q8NG50 284 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 SPATA20Q8TB22 786 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ASZ1Q8WWH4 475 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TRUB1Q8WWH5 349 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HES6Q96HZ4 224 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 CELF4Q9BZC1 486 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 C2orf40Q9H1Z8 148 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 NINJ2Q9NZG7 142 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 INPP5FQ9Y2H2 1132 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 IQGAP1P46940 1657 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 COL15A1P39059 1388 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ARHGEF33A8MVX0 844 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 SOAT2O75908 522 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 RRM2P31350 389 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 MPP1Q00013 466 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PLCL1Q15111 1095 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HABP4Q5JVS0 413 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 GPD1LQ8N335 351 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 FAM172AQ8WUF8 416 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 RTFDC1Q9BY42 306 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PRKD2Q9BZL6 878 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 SLC13A1Q9BZW2 595 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PREBQ9HCU5 417 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TMA7Q9Y2S6 64 aaKnown RBP4.79□□□□□ -1.64
SCN1A-220ENST00000641603 GIT1Q9Y2X7 761 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 NRKQ7Z2Y5 1582 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 HTR3EA5X5Y0 456 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 KRT87PA6NCN2 255 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 ORC5O43913 435 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 TCF4P15884 667 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 RTP1P59025 263 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 AP3S2P59780 193 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 PUDPQ08623 228 aa4.79□□□□□ -1.64
SCN1A-220ENST00000641603 COX10Q12887 443 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms