RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 AHCYL2Q96HN2 611 aaKnown RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 MESP1Q9BRJ9 268 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 ISCUQ9H1K1 167 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 MRPL46Q9H2W6 279 aaKnown RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 TASP1Q9H6P5 420 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 PLAC1Q9HBJ0 212 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 MOV10Q9HCE1 1003 aaKnown RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 SIRT3Q9NTG7 399 aaPredicted RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 DONSONQ9NYP3 566 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 DNAJB11Q9UBS4 358 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 TUBD1Q9UJT1 453 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 POU2F3Q9UKI9 436 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 POLHQ9Y253 713 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 PLAAQ9Y263 795 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 DRG1Q9Y295 367 aaKnown RBP0.69□□□□□ -2.3
VPS35-212ENST00000640313 ADAM18Q9Y3Q7 739 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 PLEKHM1Q9Y4G2 1056 aa0.69□□□□□ -2.3
VPS35-212ENST00000640313 ADAMTS9Q9P2N4 1935 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 CCDC154A6NI56 674 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 A6NNC1 897 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 C16orf96A6NNT2 1141 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 BECN2A8MW95 431 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 FYB1O15117 783 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 MDM4O15151 490 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 RGS14O43566 566 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 EDIL3O43854 480 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 LMX1BO60663 402 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 KLKB1P03952 638 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 CHRNB1P11230 501 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 XRCC6P12956 609 aaKnown RBP eCLIP0.68□□□□□ -2.3
VPS35-212ENST00000640313 ZNF12P17014 697 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 MASP1P48740 699 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 ATP12AP54707 1039 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 GYS2P54840 703 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 WNT3P56703 355 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 TIRAPP58753 221 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 LMO4P61968 165 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 RBM6P78332 1123 aaKnown RBP0.68□□□□□ -2.3
VPS35-212ENST00000640313 GPC5P78333 572 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 GPS2Q13227 327 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 DMP1Q13316 513 aaPredicted RBP0.68□□□□□ -2.3
VPS35-212ENST00000640313 BFSP2Q13515 415 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 CCNIQ14094 377 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 INAVAQ3KP66 663 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 MGAT5BQ3V5L5 792 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 Q5PR19 223 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 C6orf10Q5SRN2 563 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 CERCAMQ5T4B2 595 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 SPINK14Q6IE38 97 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 PARM1Q6UWI2 310 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 KRT26Q7Z3Y9 468 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 TFAP2DQ7Z6R9 452 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 NPM2Q86SE8 214 aaKnown RBP0.68□□□□□ -2.3
VPS35-212ENST00000640313 SMIM29Q86T20 159 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 NOP9Q86U38 636 aaKnown RBP0.68□□□□□ -2.3
VPS35-212ENST00000640313 GAS2L3Q86XJ1 694 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 ZNF280BQ86YH2 543 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 KLHDC8BQ8IXV7 354 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 ADGRF4Q8IZF3 695 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 CBARPQ8N350 705 aaPredicted RBP0.68□□□□□ -2.3
VPS35-212ENST00000640313 PNPLA1Q8N8W4 532 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 C7orf57Q8NEG2 295 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 NGDNQ8NEJ9 315 aaKnown RBP0.68□□□□□ -2.3
VPS35-212ENST00000640313 BRIX1Q8TDN6 353 aaKnown RBP0.68□□□□□ -2.3
VPS35-212ENST00000640313 COG1Q8WTW3 980 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 PIGKQ92643 395 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 CENPIQ92674 756 aaPredicted RBP0.68□□□□□ -2.3
VPS35-212ENST00000640313 KAT5Q92993 513 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 RUNDC1Q96C34 613 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 SCMH1Q96GD3 660 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 IGSF21Q96ID5 467 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 UHRF2Q96PU4 802 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 EGFL8Q99944 293 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 ELOVL1Q9BW60 279 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 ARL8BQ9NVJ2 186 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 XPR1Q9UBH6 696 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 USP22Q9UPT9 525 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 PTGDR2Q9Y5Y4 395 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 NFS1Q9Y697 457 aa0.68□□□□□ -2.3
VPS35-212ENST00000640313 LOC105378220A0A1B0GUY1 285 aaPredicted RBP0.67□□□□□ -2.3
VPS35-212ENST00000640313 A0A1B0GVT2 93 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 TLDC2A0PJX2 215 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 A8MVJ9 347 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 SLC16A6O15403 523 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 ASAP2O43150 1006 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 GPR39O43194 453 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 CBFA2T3O75081 653 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 UNC5CO95185 931 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 AHSGP02765 367 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 LCATP04180 440 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 THP07101 528 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 GRPP07492 148 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 MYCLP1P12525 358 aaPredicted RBP0.67□□□□□ -2.3
VPS35-212ENST00000640313 DAOP14920 347 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 HSD3B2P26439 372 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 EPHA3P29320 983 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 IDUAP35475 653 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 PMP22Q01453 160 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 FMO1Q01740 532 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 ARL16Q0P5N6 197 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms