RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TTBK1Q5TCY1 1321 aaPredicted RBP4.95□□□□□ -1.62
CD44-239ENST00000639002 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.94□□□□□ -1.62
CD44-239ENST00000639002 C2CD4BA6NLJ0 364 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 TOMM40O96008 361 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 PLAUP00749 431 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 ARP10275 920 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 YY1P25490 414 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 IDUAP35475 653 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 ME1P48163 572 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 RAE1P78406 368 aaKnown RBP4.94□□□□□ -1.62
CD44-239ENST00000639002 GAB1Q13480 694 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 FAM110CQ1W6H9 321 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 RUSC1-AS1Q66K80 236 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 RNF44Q7L0R7 432 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 SDR16C5Q8N3Y7 309 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 FSTL5Q8N475 847 aaPredicted RBP4.94□□□□□ -1.62
CD44-239ENST00000639002 ARFGAP1Q8N6T3 406 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 IPCEF1Q8WWN9 437 aaPredicted RBP4.94□□□□□ -1.62
CD44-239ENST00000639002 P2RY11Q96G91 374 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 ADGRE3Q9BY15 652 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 KRTAP2-2Q9BYT5 123 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 SLC25A32Q9H2D1 315 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 POT1Q9NUX5 634 aa4.94□□□□□ -1.62
CD44-239ENST00000639002 FAM90A10PA6NDY2 464 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 INPPL1O15357 1258 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 ALPLP05186 524 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 RPL17P18621 184 aaKnown RBP4.93□□□□□ -1.62
CD44-239ENST00000639002 HOXA7P31268 230 aaPredicted RBP4.93□□□□□ -1.62
CD44-239ENST00000639002 ATICP31939 592 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 CCKARP32238 428 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 CPA2P48052 419 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 JAK3P52333 1124 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 NANOS2P60321 138 aaKnown RBP4.93□□□□□ -1.62
CD44-239ENST00000639002 WDR5P61964 334 aaKnown RBP4.93□□□□□ -1.62
CD44-239ENST00000639002 KCNJ12Q14500 433 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 GFOD2Q3B7J2 385 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 KLHL22Q53GT1 634 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 KRT28Q7Z3Y7 464 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 KRT78Q8N1N4 520 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 TIFAQ96CG3 184 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 TRMT61AQ96FX7 289 aaKnown RBP4.93□□□□□ -1.62
CD44-239ENST00000639002 FCRL5Q96RD9 977 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 WDR24Q96S15 920 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 TRMOQ9BU70 441 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 CINPQ9BW66 212 aaPredicted RBP4.93□□□□□ -1.62
CD44-239ENST00000639002 SCNM1Q9BWG6 230 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 UNKQ9C0B0 810 aaKnown RBP4.93□□□□□ -1.62
CD44-239ENST00000639002 TCEAL9Q9UHQ7 104 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 LRP12Q9Y561 859 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 HS3ST3B1Q9Y662 390 aa4.93□□□□□ -1.62
CD44-239ENST00000639002 SIRT4Q9Y6E7 314 aaPredicted RBP4.93□□□□□ -1.62
CD44-239ENST00000639002 SLC22A23A1A5C7 686 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 GOLGA6CA6NDK9 693 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 GOLGA6BA6NDN3 693 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 GOLGA6DP0CG33 693 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 TKTP29401 623 aaKnown RBP4.92□□□□□ -1.62
CD44-239ENST00000639002 DAG1Q14118 895 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 ABLIM2Q6H8Q1 611 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 C9orf47Q6ZRZ4 202 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 P3H2Q8IVL5 708 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 ABHD10Q9NUJ1 306 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 GOLGA6AQ9NYA3 693 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 VPS4AQ9UN37 437 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 PCDHB2Q9Y5E7 798 aa4.92□□□□□ -1.62
CD44-239ENST00000639002 ZNF814B7Z6K7 855 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 PRYO14603 147 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 KCNQ3O43525 872 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 PIK3CBP42338 1070 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 THBS3P49746 956 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 B4GALNT1Q00973 533 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 KLHDC7AQ5VTJ3 777 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 FAM90A2PQ658T7 463 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 MEPCEQ7L2J0 689 aaKnown RBP4.91□□□□□ -1.62
CD44-239ENST00000639002 MMP21Q8N119 569 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 PELI3Q8N2H9 469 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 RNF152Q8N8N0 203 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 MARK4Q96L34 752 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 NUP62CLQ9H1M0 184 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 TMEM8AQ9HCN3 771 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 SEMA4BQ9NPR2 832 aaPredicted RBP4.91□□□□□ -1.62
CD44-239ENST00000639002 DDX21Q9NR30 783 aaKnown RBP eCLIP4.91□□□□□ -1.62
CD44-239ENST00000639002 CORO2BQ9UQ03 480 aa4.91□□□□□ -1.62
CD44-239ENST00000639002 HEMK1Q9Y5R4 338 aaPredicted RBP4.91□□□□□ -1.62
CD44-239ENST00000639002 CCDC187A0A096LP49 1063 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 H3BNX3 289 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 AREL1O15033 823 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 OAZ2O95190 189 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 IL18RAPO95256 599 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 CRYABP02511 175 aaKnown RBP4.9□□□□□ -1.63
CD44-239ENST00000639002 ZNF543Q08ER8 600 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 PPP4R4Q6NUP7 873 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 CRTC1Q6UUV9 634 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 RBM44Q6ZP01 1051 aaKnown RBP4.9□□□□□ -1.63
CD44-239ENST00000639002 COLCA1Q6ZS62 124 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 KIAA0408Q6ZU52 694 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 ATP11CQ8NB49 1132 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 BCAS4Q8TDM0 211 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 MSI2Q96DH6 328 aaKnown RBP4.9□□□□□ -1.63
CD44-239ENST00000639002 ZCWPW1Q9H0M4 648 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 HEYLQ9NQ87 328 aaPredicted RBP4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms