RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GALK1P51570 392 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 ARID5AQ03989 594 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 TMEM196Q5HYL7 178 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 LY6G5CQ5SRR4 150 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 OR6B2Q6IFH4 312 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 TRIM72Q6ZMU5 477 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 Q6ZNB5 142 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 TOGARAM2Q6ZUX3 1019 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 ERICH1Q86X53 443 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 CD101Q93033 1021 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 IER2Q9BTL4 223 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 ASNSD1Q9NWL6 643 aa21.62■■□□□ 1.05
CLN3-240ENST00000631023 TPM3P06753 285 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 DRD1P21728 446 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 CHKAP35790 457 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 TRIP4Q15650 581 aaPredicted RBP21.61■■□□□ 1.05
CLN3-240ENST00000631023 ANO4Q32M45 955 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 PTPN20Q4JDL3 420 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 SYNPOQ8N3V7 929 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 SLC20A1Q8WUM9 679 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 C18orf8Q96DM3 657 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 CHFRQ96EP1 664 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 NUP58Q9BVL2 599 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 TJP2Q9UDY2 1190 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 NAALADL1Q9UQQ1 740 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 HSF2BPO75031 334 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 KLKB1P03952 638 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 ERBB2P04626 1255 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 FYNP06241 537 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 SLC6A3Q01959 620 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 DENND1CQ8IV53 801 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 SERPINB11Q96P15 392 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 EDEM3Q9BZQ6 932 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 IRF2BPLQ9H1B7 796 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 WDR35Q9P2L0 1181 aa21.61■■□□□ 1.05
CLN3-240ENST00000631023 EIF2DP41214 584 aaKnown RBP21.6■■□□□ 1.05
CLN3-240ENST00000631023 GABRB2P47870 512 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 ZNF445P59923 1031 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 NOMO3P69849 1222 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 FMO1Q01740 532 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 CCINQ13939 588 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 PREPLQ4J6C6 727 aaPredicted RBP21.6■■□□□ 1.05
CLN3-240ENST00000631023 NAA35Q5VZE5 725 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 FAM183BPQ6ZVS7 135 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 TMEM25Q86YD3 366 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 C1orf210Q8IVY1 113 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 UNC45BQ8IWX7 931 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 CPA5Q8WXQ8 436 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 CHRDQ9H2X0 955 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 SPATA6Q9NWH7 488 aaPredicted RBP21.6■■□□□ 1.05
CLN3-240ENST00000631023 IFNKQ9P0W0 207 aa21.6■■□□□ 1.05
CLN3-240ENST00000631023 AGO1Q9UL18 857 aaKnown RBP21.6■■□□□ 1.05
CLN3-240ENST00000631023 KIAA1549LQ6ZVL6 1849 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.59■■□□□ 1.05
CLN3-240ENST00000631023 HOXC11O43248 304 aaPredicted RBP21.59■■□□□ 1.05
CLN3-240ENST00000631023 MSI1O43347 362 aaKnown RBP21.59■■□□□ 1.05
CLN3-240ENST00000631023 CHRNB2P17787 502 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 TBX4P57082 545 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 RING1Q06587 406 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 NNTQ13423 1086 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 FBXO43Q4G163 708 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 FIGNQ5HY92 759 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 NUGGCQ68CJ6 796 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 FSTL4Q6MZW2 842 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 OLFML1Q6UWY5 402 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 CCDC26Q8TAB7 109 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 DQX1Q8TE96 717 aaKnown RBP21.59■■□□□ 1.05
CLN3-240ENST00000631023 BAP1Q92560 729 aa21.59■■□□□ 1.05
CLN3-240ENST00000631023 CYP1A1P04798 512 aaPredicted RBP21.58■■□□□ 1.05
CLN3-240ENST00000631023 OPRD1P41143 372 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 PTPN5P54829 565 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 TAF5Q15542 800 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 GAB4Q2WGN9 574 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 DCAF6Q58WW2 860 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 SYPL2Q5VXT5 272 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 TPGS1Q6ZTW0 290 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 SLC26A9Q7LBE3 791 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 IQCDQ96DY2 449 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 XPO6Q96QU8 1125 aaKnown RBP21.58■■□□□ 1.05
CLN3-240ENST00000631023 AGPAT1Q99943 283 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 BBS2Q9BXC9 721 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 FBRSL1Q9HCM7 1045 aaKnown RBP21.58■■□□□ 1.05
CLN3-240ENST00000631023 RBM12Q9NTZ6 932 aaKnown RBP21.58■■□□□ 1.05
CLN3-240ENST00000631023 RAPGEFL1Q9UHV5 662 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 TLR6Q9Y2C9 796 aa21.58■■□□□ 1.05
CLN3-240ENST00000631023 CBFA2T2O43439 604 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 LATS1O95835 1130 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 SCNN1AP37088 669 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 CDK17Q00537 523 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 MAMSTRQ6ZN01 415 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 DEFB106AQ8N104 65 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 CPXM2Q8N436 756 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 RNF214Q8ND24 703 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 PRSS33Q8NF86 280 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 ZNF397Q8NF99 534 aaPredicted RBP21.57■■□□□ 1.04
CLN3-240ENST00000631023 PIWIL1Q96J94 861 aaKnown RBP21.57■■□□□ 1.04
CLN3-240ENST00000631023 PNKPQ96T60 521 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 SEPT11Q9NVA2 429 aaKnown RBP21.57■■□□□ 1.04
CLN3-240ENST00000631023 MARK1Q9P0L2 795 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 LRRC53A6NM62 1247 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms