RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NPR3P17342 541 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 DESP17661 470 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 PHBP35232 272 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 RDXP35241 583 aaKnown RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 THPOP40225 353 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 PNPLA4P41247 253 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 MATKP42679 507 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 YWHAZP63104 245 aaKnown RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 CAP1Q01518 475 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 ACTN3Q08043 901 aaPredicted RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 DPYSL2Q16555 572 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 EFHC2Q5JST6 749 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 RNF217Q8TC41 542 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 EDEM1Q92611 657 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 ACSS3Q9H6R3 686 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 UGT1A7Q9HAW7 530 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 UGT1A10Q9HAW8 530 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 UGT1A8Q9HAW9 530 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 ANLNQ9NQW6 1124 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 DTLQ9NZJ0 730 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 SEPT10Q9P0V9 454 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 INPP5FQ9Y2H2 1132 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 MAD1L1Q9Y6D9 718 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 YJEFN3A6XGL0 299 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 CXorf49A8MYA2 514 aaPredicted RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 E7ENQ6 273 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 E7ESA3 106 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 ASMTLO95671 621 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 GHRP10912 638 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 TGM2P21980 687 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 CD52P31358 61 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 PTPN9P43378 593 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 FLT3LGP49771 235 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 IFRD2Q12894 506 aaPredicted RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 PCBP1Q15365 356 aaKnown RBP eCLIP11.01□□□□□ -0.656e-6■■■■■ 34.5
CUX1-221ENST00000622516 NCBP2-AS2Q69YL0 99 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 LVRNQ6Q4G3 990 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 DSTYKQ6XUX3 929 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 DENND5BQ6ZUT9 1274 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 CAND1Q86VP6 1230 aaKnown RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 ZDHHC17Q8IUH5 632 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 SIX6OS1Q8N1H7 587 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.01□□□□□ -0.65
CUX1-221ENST00000622516 TEKT4Q8WW24 435 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 CENPIQ92674 756 aaPredicted RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 PCED1BQ96HM7 432 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 RMDN2Q96LZ7 410 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 ZNF670Q9BS34 389 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 PITPNM3Q9BZ71 974 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 ULBP1Q9BZM6 244 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 ZFYVE28Q9HCC9 887 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 PIGVQ9NUD9 493 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 HAUS2Q9NVX0 235 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 SLC17A7Q9P2U7 560 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 GTF2IRD1Q9UHL9 959 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 TEX264Q9Y6I9 313 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 FAM72CH0Y354 149 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 XPO1O14980 1071 aaKnown RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 THP07101 528 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 ADRA1DP25100 572 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 SNX16P57768 344 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 MRPS5P82675 430 aaKnown RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 IL9RQ01113 521 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 FAAP100Q0VG06 881 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 AP1B1Q10567 949 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 OLIG2Q13516 323 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 FAM72AQ5TYM5 149 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 OTUD1Q5VV17 481 aaPredicted RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 ICE2Q659A1 982 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 FAM72DQ6L9T8 149 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 TRPM8Q7Z2W7 1104 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 FAM72BQ86X60 149 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 UNC5BQ8IZJ1 945 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 NME8Q8N427 588 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 PPM1NQ8N819 430 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 CCDC63Q8NA47 563 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 CCNYQ8ND76 341 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 SLC7A14Q8TBB6 771 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 DCAKDQ8WVC6 231 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 MAGEB18Q96M61 343 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 HNRNPABQ99729 332 aaKnown RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 NSRP1Q9H0G5 558 aaKnown RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 PAK5Q9P286 719 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 USP15Q9Y4E8 981 aaPredicted RBP11.01□□□□□ -0.65
CUX1-221ENST00000622516 SNX10Q9Y5X0 201 aa11.01□□□□□ -0.65
CUX1-221ENST00000622516 I6L893 689 aaPredicted RBP11□□□□□ -0.65
CUX1-221ENST00000622516 CAPN9O14815 690 aa11□□□□□ -0.65
CUX1-221ENST00000622516 MFSD11O43934 449 aa11□□□□□ -0.65
CUX1-221ENST00000622516 MGEA5O60502 916 aa11□□□□□ -0.65
CUX1-221ENST00000622516 DUSP11O75319 330 aaKnown RBP11□□□□□ -0.65
CUX1-221ENST00000622516 AP1G2O75843 785 aa11□□□□□ -0.65
CUX1-221ENST00000622516 VAV1P15498 845 aa11□□□□□ -0.65
CUX1-221ENST00000622516 SLC8A3P57103 927 aa11□□□□□ -0.65
CUX1-221ENST00000622516 RALGAPA2Q2PPJ7 1873 aa11□□□□□ -0.65
CUX1-221ENST00000622516 SLC25A52Q3SY17 297 aa11□□□□□ -0.65
CUX1-221ENST00000622516 TAF2Q6P1X5 1199 aa11□□□□□ -0.65
CUX1-221ENST00000622516 PPP1R21Q6ZMI0 780 aa11□□□□□ -0.65
CUX1-221ENST00000622516 AGMOQ6ZNB7 445 aa11□□□□□ -0.65
CUX1-221ENST00000622516 TDRPQ86YL5 185 aa11□□□□□ -0.65
CUX1-221ENST00000622516 RIBC1Q8N443 379 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms