RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SYDE1Q6ZW31 735 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-213ENST00000620219 CHSY1Q86X52 802 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 GLIS1Q8NBF1 620 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 MRPL9Q9BYD2 267 aaKnown RBP16.3■□□□□ 0.2
CPSF1-213ENST00000620219 PABPC3Q9H361 631 aaKnown RBP16.3■□□□□ 0.2
CPSF1-213ENST00000620219 UBP1Q9NZI7 540 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 ATP9BO43861 1147 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 BANF1O75531 89 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 DDHD2O94830 711 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 PECAM1P16284 738 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-213ENST00000620219 MSH2P43246 934 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 SEPT6Q14141 434 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 ARHGAP17Q68EM7 881 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 RNF157Q96PX1 679 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 APOL2Q9BQE5 337 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 TSEN34Q9BSV6 310 aaKnown RBP16.3■□□□□ 0.2
CPSF1-213ENST00000620219 UPF3AQ9H1J1 476 aaKnown RBP16.3■□□□□ 0.2
CPSF1-213ENST00000620219 TMEM161AQ9NX61 479 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 PCYOX1Q9UHG3 505 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 SNX10Q9Y5X0 201 aa16.3■□□□□ 0.2
CPSF1-213ENST00000620219 RBBP6Q7Z6E9 1792 aaKnown RBP16.3■□□□□ 0.2
CPSF1-213ENST00000620219 FOXO6A8MYZ6 492 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 HMGB1P1B2RPK0 211 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 PPP1R12AO14974 1030 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 MEFVO15553 781 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 EOMESO95936 686 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 CDKN2BP42772 138 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 CAP1Q01518 475 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 UPP1Q16831 310 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 ANKRD20A8PQ5CZ79 823 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 PPM1NQ8N819 430 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 LRRC19Q9H756 370 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 URODP06132 367 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 EIF3BP55884 814 aaKnown RBP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 IQCKQ8N0W5 287 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 GDAP1Q8TB36 358 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 EBAG9O00559 213 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 NDC80O14777 642 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 PTGIRP43119 386 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 AARSP49588 968 aaKnown RBP eCLIP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 PITX1P78337 314 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 ACAP1Q15027 740 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 SLC26A9Q7LBE3 791 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 ANKS1BQ7Z6G8 1248 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 UNC45BQ8IWX7 931 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 PCDH18Q9HCL0 1135 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 APOC4-APOC2K7ER74 178 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 ENPP3O14638 875 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 APOC2P02655 101 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 YWHAQP27348 245 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 STX2P32856 288 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 ZNF252P-AS1Q0IIN9 211 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 ZKSCAN8Q15776 578 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 ZBTB6Q15916 424 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 FUT10Q6P4F1 479 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 PCGF5Q86SE9 256 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 TFB1MQ8WVM0 346 aaKnown RBP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 RPRD1AQ96P16 312 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 MAGEB5Q9BZ81 275 aa16.29■□□□□ 0.2
CPSF1-213ENST00000620219 INTS9Q9NV88 658 aaKnown RBP16.29■□□□□ 0.2
CPSF1-213ENST00000620219 DNM1LO00429 736 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 F9P00740 461 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 LRPAP1P30533 357 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 ELAVL2Q12926 359 aaKnown RBP16.28■□□□□ 0.2
CPSF1-213ENST00000620219 PTP4A2Q12974 167 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 PRPSAP1Q14558 356 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 HHATQ5VTY9 493 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 ACBD6Q9BR61 282 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 SLC4A5Q9BY07 1137 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 WDR91A4D1P6 747 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 H7C4K7 107 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 GOLGA8RI6L899 631 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 SERPINB6P35237 376 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 PCK1P35558 622 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 SLC5A3P53794 718 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 GBE1Q04446 702 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 POLNQ7Z5Q5 900 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 CROCCP2Q86T23 111 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 LGMNQ99538 433 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 TRIM62Q9BVG3 475 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 OR12D3Q9UGF7 316 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 ETFBP38117 255 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 C6orf118Q5T5N4 469 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 OLFML1Q6UWY5 402 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 TMEM110Q86TL2 294 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 TSPAN18Q96SJ8 248 aa16.28■□□□□ 0.2
CPSF1-213ENST00000620219 RASA4BC9J798 803 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 RASA4O43374 803 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 ZNF623O75123 536 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 STIP1P31948 543 aaKnown RBP16.27■□□□□ 0.2
CPSF1-213ENST00000620219 PDK1Q15118 436 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 UBAP2Q5T6F2 1119 aaKnown RBP16.27■□□□□ 0.2
CPSF1-213ENST00000620219 C3orf62Q6ZUJ4 267 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 BBS12Q6ZW61 710 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 FNIP1Q8TF40 1166 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 SMOQ99835 787 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 CNGB3Q9NQW8 809 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 CALCOCO1Q9P1Z2 691 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 CTNNAL1Q9UBT7 734 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 PARP14Q460N5 1801 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms