RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 YWHAZP63104 245 aaKnown RBP20.21■□□□□ 0.83
UPF1-212ENST00000601689 NHLH1Q02575 133 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 MTAPQ13126 283 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 FZD5Q13467 585 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 ZNF528Q3MIS6 628 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 OR6B2Q6IFH4 312 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 DPY19L2P1Q6NXN4 242 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 MSANTD2Q6P1R3 559 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 TPGS1Q6ZTW0 290 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 BHLHA9Q7RTU4 235 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 DENND1CQ8IV53 801 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 ZNF687Q8N1G0 1237 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 C1orf131Q8NDD1 294 aaKnown RBP20.21■□□□□ 0.83
UPF1-212ENST00000601689 CHFRQ96EP1 664 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 DDX50Q9BQ39 737 aaKnown RBP20.21■□□□□ 0.83
UPF1-212ENST00000601689 FAM126AQ9BYI3 521 aaPredicted RBP20.21■□□□□ 0.83
UPF1-212ENST00000601689 RTN4Q9NQC3 1192 aaKnown RBP20.21■□□□□ 0.83
UPF1-212ENST00000601689 COL4A3Q01955 1670 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 CACNA1IQ9P0X4 2223 aa20.21■□□□□ 0.83
UPF1-212ENST00000601689 LATS1O95835 1130 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 TPM3P06753 285 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 GBP1P32455 592 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 PLA2G5P39877 138 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 SLC11A2P49281 568 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 KLK7P49862 253 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 CSTF1Q05048 431 aaKnown RBP20.2■□□□□ 0.82
UPF1-212ENST00000601689 IQCB1Q15051 598 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 E2F5Q15329 346 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 TAF3Q5VWG9 929 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 FSTL4Q6MZW2 842 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 TRIM72Q6ZMU5 477 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 ERICH1Q86X53 443 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 CLEC4CQ8WTT0 213 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 ACDQ96AP0 544 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 HSD3B7Q9H2F3 369 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 CBX8Q9HC52 389 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 ARHGEF4Q9NR80 690 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 RBM12Q9NTZ6 932 aaKnown RBP20.2■□□□□ 0.82
UPF1-212ENST00000601689 ASNSD1Q9NWL6 643 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 SLC12A6Q9UHW9 1150 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 ATG2BQ96BY7 2078 aa20.2■□□□□ 0.82
UPF1-212ENST00000601689 TYW5A2RUC4 315 aaKnown RBP20.19■□□□□ 0.82
UPF1-212ENST00000601689 NEDD8-MDP1E9PL57 170 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 PAPSS1O43252 624 aaPredicted RBP20.19■□□□□ 0.82
UPF1-212ENST00000601689 HSF2BPO75031 334 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 EGFP01133 1207 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 GRIA2P42262 883 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 TBX4P57082 545 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 NNTQ13423 1086 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 TRIP4Q15650 581 aaPredicted RBP20.19■□□□□ 0.82
UPF1-212ENST00000601689 Q6ZNB5 142 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 TMEM25Q86YD3 366 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 ATRIPQ8WXE1 791 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 C18orf8Q96DM3 657 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 CPXM1Q96SM3 734 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 TMEM51Q9NW97 253 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 AGO1Q9UL18 857 aaKnown RBP20.19■□□□□ 0.82
UPF1-212ENST00000601689 SLC8A2Q9UPR5 921 aa20.19■□□□□ 0.82
UPF1-212ENST00000601689 TBC1D3BA6NDS4 549 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 RNF40O75150 1001 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 SP9P0CG40 484 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 TYRP14679 529 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 OPRD1P41143 372 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 CDK17Q00537 523 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 RING1Q06587 406 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 MTA1Q13330 715 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 LUZP1Q86V48 1076 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 CPXM2Q8N436 756 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 WDTC1Q8N5D0 677 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 NAT16Q8N8M0 369 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 EPS8L1Q8TE68 723 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 DDI1Q8WTU0 396 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 SEMA4AQ9H3S1 761 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 DNAJC17Q9NVM6 304 aaKnown RBP20.18■□□□□ 0.82
UPF1-212ENST00000601689 MARK1Q9P0L2 795 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 CYTH4Q9UIA0 394 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 TLR6Q9Y2C9 796 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 WDFY4Q6ZS81 3184 aa20.18■□□□□ 0.82
UPF1-212ENST00000601689 MUC6Q6W4X9 2439 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 A0A1W2PQC6 194 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 GABBR2O75899 941 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 KAT7O95251 611 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 APOEP02649 317 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 SLC2A3P11169 496 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 FERP16591 822 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 CDH5P33151 784 aaPredicted RBP20.17■□□□□ 0.82
UPF1-212ENST00000601689 TNFRSF4P43489 277 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 UBASH3AP57075 661 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 JAM2P57087 298 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 MRPS21P82921 87 aaKnown RBP20.17■□□□□ 0.82
UPF1-212ENST00000601689 CDR2Q01850 454 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 SLC6A3Q01959 620 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 HSF5Q4G112 596 aaPredicted RBP20.17■□□□□ 0.82
UPF1-212ENST00000601689 MPPE1Q53F39 396 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 DCAF6Q58WW2 860 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 GRAMD4Q6IC98 578 aa20.17■□□□□ 0.82
UPF1-212ENST00000601689 APTXQ7Z2E3 356 aaKnown RBP20.17■□□□□ 0.82
UPF1-212ENST00000601689 TRMT11Q7Z4G4 463 aaKnown RBP20.17■□□□□ 0.82
UPF1-212ENST00000601689 NOP9Q86U38 636 aaKnown RBP20.17■□□□□ 0.82
UPF1-212ENST00000601689 CCDC117Q8IWD4 279 aaPredicted RBP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms