RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 KIAA1586Q9HCI6 787 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 IL37Q9NZH6 218 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 CLEC4EQ9ULY5 219 aa9.13□□□□□ -0.95
SHKBP1-220ENST00000599716 DOPEY2Q9Y3R5 2298 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 GOLGA4Q13439 2230 aaKnown RBP9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 ATP8B3O60423 1300 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 GOLGA8CPA6NN73 597 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 KCNJ18B7U540 433 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 HHLA1C9JL84 531 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 SPTLC2O15270 562 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 KIF20AO95235 890 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 C4BPAP04003 597 aaKnown RBP9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 CISD3P0C7P0 127 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 PDCP20941 246 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 ACO1P21399 889 aaKnown RBP9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 KCNC4Q03721 635 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 GRIK2Q13002 908 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 GEN1Q17RS7 908 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 FUT11Q495W5 492 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 SNX30Q5VWJ9 437 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 UNC13DQ70J99 1090 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 HTR3DQ70Z44 454 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 RAB44Q7Z6P3 723 aaPredicted RBP9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 SLCO6A1Q86UG4 719 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 ZCCHC9Q8N567 271 aaKnown RBP9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 MDM1Q8TC05 714 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 PARD3BQ8TEW8 1205 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 SORCS1Q8WY21 1168 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 SYAP1Q96A49 352 aaPredicted RBP9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 TOE1Q96GM8 510 aaKnown RBP9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 C7orf25Q9BPX7 421 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 MKRN2Q9H000 416 aaKnown RBP9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 MMRN2Q9H8L6 949 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 ZFHX3Q15911 3703 aa9.12□□□□□ -0.95
SHKBP1-220ENST00000599716 FAM92AA1XBS5 289 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 STX6O43752 255 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 CACNG3O60359 315 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 NDUFS2O75306 463 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 GJB3O75712 270 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 STAU1O95793 577 aaKnown RBP9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 KLKB1P03952 638 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 FTH1P19P0C7X4 201 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 RARGP13631 454 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 CD58P19256 250 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 ATICP31939 592 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 IL12RB1P42701 662 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 ASPAP45381 313 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 DGKGP49619 791 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 BNC1Q01954 994 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 STK4Q13043 487 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 BYSLQ13895 437 aaKnown RBP9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 TRIP6Q15654 476 aaKnown RBP9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 KNOP1Q1ED39 458 aaKnown RBP9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 C10orf120Q5SQS8 335 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 C1orf220Q5T0J3 134 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 SDE2Q6IQ49 451 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 LAYNQ6UX15 382 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 SLC36A4Q6YBV0 504 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 CLEC20AQ6ZU45 233 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 TRMT11Q7Z4G4 463 aaKnown RBP9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 SCD5Q86SK9 330 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 FAM124AQ86V42 546 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 NAXDQ8IW45 347 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 ZNF366Q8N895 744 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 KIAA0895Q8NCT3 520 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 OVCA2Q8WZ82 227 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 OTUB2Q96DC9 234 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 GABRG3Q99928 467 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 GPR174Q9BXC1 333 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 APOBEC3GQ9HC16 384 aaKnown RBP9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 TLR8Q9NR97 1041 aaKnown RBP9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 DNAAF2Q9NVR5 837 aaKnown RBP9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 SERTAD1Q9UHV2 236 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 STARD13Q9Y3M8 1113 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 STON1Q9Y6Q2 735 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 PTPRBP23467 1997 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 TMEM131Q92545 1883 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 ITPR2Q14571 2701 aa9.11□□□□□ -0.95
SHKBP1-220ENST00000599716 A0A1W2PQD8 194 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 MEI4A8MW99 385 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 KCNK3O14649 394 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 KLRC4O43908 158 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 STC2O76061 302 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 HLA-DRAP01903 254 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 FAM200BP0CF97 657 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 TRIM49P0CI25 452 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 TRIM49CP0CI26 452 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 NCAM1P13591 858 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 HLA-EP13747 358 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 ATP5C1P36542 298 aaKnown RBP9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 PIK3CAP42336 1068 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 TUBP50607 506 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 BMT2Q1RMZ1 405 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 ZNF394Q53GI3 561 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 CCDC157Q569K6 752 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 SPDYCQ5MJ68 293 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 CEP135Q66GS9 1140 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 Q6ZNB5 142 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 SV2AQ7L0J3 742 aa9.1□□□□□ -0.95
SHKBP1-220ENST00000599716 KIAA1958Q8N8K9 716 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms