RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 KRTAP1-1Q07627 177 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 BIRC2Q13490 618 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 ST3GAL2Q16842 350 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 TMEM119Q4V9L6 283 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.71□□□□□ -1.5
SMAD4-216ENST00000593223 MRNIPQ6NTE8 343 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 SERPINA13PQ6UXR4 307 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 USP49Q70CQ1 688 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 MORC1Q86VD1 984 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 SKAP1Q86WV1 359 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 P3H2Q8IVL5 708 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 CCDC28AQ8IWP9 274 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 METTL25Q8N6Q8 603 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 TERB1Q8NA31 727 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 FAM98AQ8NCA5 519 aaKnown RBP5.71□□□□□ -1.5
SMAD4-216ENST00000593223 MBD3L2Q8NHZ7 208 aaPredicted RBP5.71□□□□□ -1.5
SMAD4-216ENST00000593223 ABHD5Q8WTS1 349 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 GRAMD1AQ96CP6 724 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 MPHOSPH6Q99547 160 aaKnown RBP5.71□□□□□ -1.5
SMAD4-216ENST00000593223 MACROD1Q9BQ69 325 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 SENP7Q9BQF6 1050 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 PTGFRNQ9P2B2 879 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 VPS51Q9UID3 782 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 ZMYND8Q9ULU4 1186 aaPredicted RBP5.71□□□□□ -1.5
SMAD4-216ENST00000593223 RGS12O14924 1447 aa5.71□□□□□ -1.5
SMAD4-216ENST00000593223 FAM234BA2RU67 622 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 ZNF213O14771 459 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 SPRY2O43597 315 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 TMPRSS11DO60235 418 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 PROP1O75360 226 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 TMEM225BP0DP42 221 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 HOXA4Q00056 320 aaPredicted RBP5.7□□□□□ -1.5
SMAD4-216ENST00000593223 MPEG1Q2M385 716 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 MEX3CQ5U5Q3 659 aaKnown RBP5.7□□□□□ -1.5
SMAD4-216ENST00000593223 FCRLBQ6BAA4 426 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 XRRA1Q6P2D8 792 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 TRIM72Q6ZMU5 477 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 SFTPA1Q8IWL2 248 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 SYTL1Q8IYJ3 562 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 FAM9BQ8IZU0 186 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 GLIS1Q8NBF1 620 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 CYP2W1Q8TAV3 490 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 SELENOOQ9BVL4 669 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 RGL1Q9NZL6 768 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 COX11Q9Y6N1 276 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 VWDEQ8N2E2 1590 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 LRP6O75581 1613 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 HECW1Q76N89 1606 aa5.7□□□□□ -1.5
SMAD4-216ENST00000593223 ZMYM4Q5VZL5 1548 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 FAM135BQ49AJ0 1406 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 HNRNPDLO14979 420 aaKnown RBP5.69□□□□□ -1.5
SMAD4-216ENST00000593223 ZSCAN9O15535 394 aaPredicted RBP5.69□□□□□ -1.5
SMAD4-216ENST00000593223 KCNQ3O43525 872 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 PTMAP06454 111 aaKnown RBP5.69□□□□□ -1.5
SMAD4-216ENST00000593223 HSP90AA1P07900 732 aaKnown RBP5.69□□□□□ -1.5
SMAD4-216ENST00000593223 GABRB3P28472 473 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 TECP42680 631 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 COPB1P53618 953 aaKnown RBP5.69□□□□□ -1.5
SMAD4-216ENST00000593223 RHBDL3P58872 404 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 PSG6Q00889 435 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 FOXD4Q12950 439 aaPredicted RBP5.69□□□□□ -1.5
SMAD4-216ENST00000593223 OS9Q13438 667 aaPredicted RBP5.69□□□□□ -1.5
SMAD4-216ENST00000593223 CLCA4Q14CN2 919 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 DGKKQ5KSL6 1271 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 RAP1GAP2Q684P5 730 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 ABLIM2Q6H8Q1 611 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 KIRREL2Q6UWL6 708 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 KIAA0408Q6ZU52 694 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 PRIMA1Q86XR5 153 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 KRT73Q86Y46 540 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 MUL1Q969V5 352 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 WDYHV1Q96HA8 205 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 MMS19Q96T76 1030 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 THAP7Q9BT49 309 aaPredicted RBP5.69□□□□□ -1.5
SMAD4-216ENST00000593223 CDC23Q9UJX2 597 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 PNMA2Q9UL42 364 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 MAGED2Q9UNF1 606 aaPredicted RBP5.69□□□□□ -1.5
SMAD4-216ENST00000593223 LRCH1Q9Y2L9 728 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 MAGI2Q86UL8 1455 aa5.69□□□□□ -1.5
SMAD4-216ENST00000593223 ARHGEF17Q96PE2 2063 aaPredicted RBP5.68□□□□□ -1.5
SMAD4-216ENST00000593223 C9orf84Q5VXU9 1444 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 A8MVJ9 347 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 GCATO75600 419 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 WDR47O94967 919 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 SRGAP2BP0DMP2 458 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 ARP10275 920 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 PECAM1P16284 738 aaPredicted RBP5.68□□□□□ -1.5
SMAD4-216ENST00000593223 EGR1P18146 543 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 ADRA1DP25100 572 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 MST1P26927 711 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 SERPINB3P29508 390 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 DIO1P49895 249 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 LMAN2Q12907 356 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 STARD3Q14849 445 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 MAPKAPK3Q16644 382 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 ARHGAP15Q53QZ3 475 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 RNASE12Q5GAN4 147 aaKnown RBP5.68□□□□□ -1.5
SMAD4-216ENST00000593223 SUN3Q8TAQ9 357 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 CTHRC1Q96CG8 243 aa5.68□□□□□ -1.5
SMAD4-216ENST00000593223 REPS1Q96D71 796 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms