RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 CCDC89Q8N998 374 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 C12orf50Q8NA57 414 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 BBOF1Q8ND07 529 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 OVCA2Q8WZ82 227 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 HERVK_113Q902F9 699 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 P3H4Q92791 437 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 PIWIL1Q96J94 861 aaKnown RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 B3GALT6Q96L58 329 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 SLC2A13Q96QE2 648 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 TMEM209Q96SK2 561 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 PKMYT1Q99640 499 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 C11orf84Q9BUA3 381 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 SNRNP25Q9BV90 132 aaKnown RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 RHOBTB2Q9BYZ6 727 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 FAM129AQ9BZQ8 928 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 WDCPQ9H6R7 721 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 RC3H2Q9HBD1 1191 aaKnown RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 CYP4F11Q9HBI6 524 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 CHST7Q9NS84 486 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 TMLHEQ9NVH6 421 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 DONSONQ9NYP3 566 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 RCOR3Q9P2K3 495 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 MTRF1LQ9UGC7 380 aaKnown RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 AFF4Q9UHB7 1163 aaKnown RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 ASIC3Q9UHC3 531 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 ZMYND8Q9ULU4 1186 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 MAGED2Q9UNF1 606 aaPredicted RBP6.44□□□□□ -1.38
LIG3-206ENST00000586058 SCML2Q9UQR0 700 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 LZTS1Q9Y250 596 aa6.44□□□□□ -1.38
LIG3-206ENST00000586058 NYNRINQ9P2P1 1898 aaKnown RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 ANKRD36A6QL64 1941 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 hCG_1818297A0A087WSY0 165 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 WDR27A2RRH5 827 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 TYW5A2RUC4 315 aaKnown RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 CFAP69A5D8W1 941 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 YJEFN3A6XGL0 299 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 ZNF487B1APH4 448 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 HHLA1C9JL84 531 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 E7ENQ6 273 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 APOC4-APOC2K7ER74 178 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 SGK1O00141 431 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 EEF2KO00418 725 aaKnown RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 FSCN2O14926 492 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 PPP1R12AO14974 1030 aaPredicted RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 CST8O60676 142 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 APOC2P02655 101 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 RARAP10276 462 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 ATF2P15336 505 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 ITGB8P26012 769 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 CCR1P32246 355 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 HTR7P34969 479 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 TPI1P60174 286 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 DYNLT1P63172 113 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 GUCY2DQ02846 1103 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 DUSP4Q13115 394 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 NNTQ13423 1086 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 BYSLQ13895 437 aaKnown RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 DPYSL2Q16555 572 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 CCNG2Q16589 344 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 DDR2Q16832 855 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 CCDC142Q17RM4 750 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 KCNT1Q5JUK3 1230 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 TMEM240Q5SV17 173 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 DAB2IPQ5VWQ8 1189 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 BSPRYQ5W0U4 402 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 PM20D1Q6GTS8 502 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 WDR93Q6P2C0 686 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 MFSD7Q6UXD7 560 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 RNF19BQ6ZMZ0 732 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 GPRIN1Q7Z2K8 1008 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 UBE2Q1Q7Z7E8 422 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 LRRTM3Q86VH5 581 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 TMEM173Q86WV6 379 aaPredicted RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 FAM131BQ86XD5 332 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 CDKL3Q8IVW4 592 aaPredicted RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 ATP6V0D2Q8N8Y2 350 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 NOA1Q8NC60 698 aaKnown RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 ZMIZ2Q8NF64 920 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 ZNF461Q8TAF7 563 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 RSAD2Q8WXG1 361 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 EDEM1Q92611 657 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 PPP2R3CQ969Q6 453 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 NTAN1Q96AB6 310 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 PGAP3Q96FM1 320 aaPredicted RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 ZNF512Q96ME7 567 aaPredicted RBP6.43□□□□□ -1.38
LIG3-206ENST00000586058 NPY6RQ99463 290 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 LRRC1Q9BTT6 524 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 HEMGNQ9BXL5 484 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 TSPYL1Q9H0U9 437 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 ZBP1Q9H171 429 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 SMOC2Q9H3U7 446 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 TLR9Q9NR96 1032 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 HAUS2Q9NVX0 235 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 CLIC5Q9NZA1 410 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 SMARCAL1Q9NZC9 954 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 FNIP2Q9P278 1114 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 PCYOX1Q9UHG3 505 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 RABGEF1Q9UJ41 708 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 ZNF148Q9UQR1 794 aa6.43□□□□□ -1.38
LIG3-206ENST00000586058 HTTP42858 3142 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms