RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 PNKPQ96T60 521 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 TRIM62Q9BVG3 475 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 NAA15Q9BXJ9 866 aaKnown RBP20.36■□□□□ 0.85
SS18-209ENST00000578595 ARHGEF4Q9NR80 690 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 TJP2Q9UDY2 1190 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 ZNF510Q9Y2H8 683 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 SIK3Q9Y2K2 1263 aa20.36■□□□□ 0.85
SS18-209ENST00000578595 GOLGA6L19H0YKK7 550 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 EPHB6O15197 1021 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 PAPSS1O43252 624 aaPredicted RBP20.35■□□□□ 0.85
SS18-209ENST00000578595 SERPINC1P01008 464 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 SNX16P57768 344 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 SATB1Q01826 763 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 GAS6Q14393 721 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 FBXO43Q4G163 708 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 ZC3H14Q6PJT7 736 aaKnown RBP20.35■□□□□ 0.85
SS18-209ENST00000578595 TMEM35BQ8NCS4 154 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 RPLP0P6Q8NHW5 317 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 XPO6Q96QU8 1125 aaKnown RBP20.35■□□□□ 0.85
SS18-209ENST00000578595 CPXM1Q96SM3 734 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 PHOX2BQ99453 314 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 CBX8Q9HC52 389 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 FBXO4Q9UKT5 387 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 HBS1LQ9Y450 684 aaKnown RBP20.35■□□□□ 0.85
SS18-209ENST00000578595 R4GN57 208 aa20.35■□□□□ 0.85
SS18-209ENST00000578595 TYRP14679 529 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 SOX5P35711 763 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 STAT1P42224 750 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 ARID5AQ03989 594 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 GAB4Q2WGN9 574 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 Q6ZNB5 142 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 NOP9Q86U38 636 aaKnown RBP20.34■□□□□ 0.85
SS18-209ENST00000578595 LUZP1Q86V48 1076 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 ADAM32Q8TC27 787 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 LHX5Q9H2C1 402 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 DNAJC17Q9NVM6 304 aaKnown RBP20.34■□□□□ 0.85
SS18-209ENST00000578595 PLK2Q9NYY3 685 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 DEC1Q9P2X7 70 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 AGO1Q9UL18 857 aaKnown RBP20.34■□□□□ 0.85
SS18-209ENST00000578595 NAALADL1Q9UQQ1 740 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 DAAM1Q9Y4D1 1078 aa20.34■□□□□ 0.85
SS18-209ENST00000578595 HOXC11O43248 304 aaPredicted RBP20.33■□□□□ 0.85
SS18-209ENST00000578595 GREM1O60565 184 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 ATG13O75143 517 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 GRAP2O75791 330 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 KAT7O95251 611 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 KLKB1P03952 638 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 CYBBP04839 570 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 CHKAP35790 457 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 TBX4P57082 545 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 C2orf27AQ580R0 203 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 HEATR6Q6AI08 1181 aaKnown RBP20.33■□□□□ 0.85
SS18-209ENST00000578595 SMYD5Q6GMV2 418 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 GRAMD4Q6IC98 578 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 MSANTD2Q6P1R3 559 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 PKN3Q6P5Z2 889 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 TOGARAM2Q6ZUX3 1019 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 FAM183BPQ6ZVS7 135 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 TMEM110Q86TL2 294 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 MAML2Q8IZL2 1156 aaPredicted RBP20.33■□□□□ 0.85
SS18-209ENST00000578595 MSANTD4Q8NCY6 345 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 EPS8L1Q8TE68 723 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 DQX1Q8TE96 717 aaKnown RBP20.33■□□□□ 0.85
SS18-209ENST00000578595 SERPINB11Q96P15 392 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 ERGIC2Q96RQ1 377 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 POPDC2Q9HBU9 364 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 PRMT8Q9NR22 394 aaPredicted RBP20.33■□□□□ 0.85
SS18-209ENST00000578595 SEPT11Q9NVA2 429 aaKnown RBP20.33■□□□□ 0.85
SS18-209ENST00000578595 WDR35Q9P2L0 1181 aa20.33■□□□□ 0.85
SS18-209ENST00000578595 SPAG17Q6Q759 2223 aa20.33■□□□□ 0.84
SS18-209ENST00000578595 SYNJ2BP-COX16A0A087WUM0 186 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 TBC1D3BA6NDS4 549 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 TEX33O43247 280 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 TULP3O75386 442 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 MMEP08473 750 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 EIF2DP41214 584 aaKnown RBP20.32■□□□□ 0.84
SS18-209ENST00000578595 RPL34P49207 117 aaKnown RBP20.32■□□□□ 0.84
SS18-209ENST00000578595 YWHAZP63104 245 aaKnown RBP20.32■□□□□ 0.84
SS18-209ENST00000578595 IQCB1Q15051 598 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 TRIP4Q15650 581 aaPredicted RBP20.32■□□□□ 0.84
SS18-209ENST00000578595 PREPLQ4J6C6 727 aaPredicted RBP20.32■□□□□ 0.84
SS18-209ENST00000578595 PTPN20Q4JDL3 420 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 NUDT18Q6ZVK8 323 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 APTXQ7Z2E3 356 aaKnown RBP20.32■□□□□ 0.84
SS18-209ENST00000578595 WDTC1Q8N5D0 677 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 CCDC26Q8TAB7 109 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 DDI1Q8WTU0 396 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 SLC20A1Q8WUM9 679 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 ACDQ96AP0 544 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 PIWIL1Q96J94 861 aaKnown RBP20.32■□□□□ 0.84
SS18-209ENST00000578595 FAM204AQ9H8W3 233 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 COX16Q9P0S2 106 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 SLC8A2Q9UPR5 921 aa20.32■□□□□ 0.84
SS18-209ENST00000578595 PIEZO1Q92508 2521 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 LRRC10BA6NIK2 292 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 TSPAN3O60637 253 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 MOCS2O96007 188 aaPredicted RBP20.31■□□□□ 0.84
SS18-209ENST00000578595 ERBB2P04626 1255 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 GRIA2P42262 883 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 DCAF6Q58WW2 860 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms