RNA–Protein interactions for RNA: ENST00000573519.5

NPLOC4-213, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 1 (best)

Gene NPLOC4, Length 654 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-213ENST00000573519 HMGB4Q8WW32 186 aa13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 KCTD13Q8WZ19 329 aa13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 CRACR2AQ9BSW2 395 aa13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 UBE2TQ9NPD8 197 aaPredicted RBP13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 OLA1Q9NTK5 396 aaKnown RBP13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 MARK1Q9P0L2 795 aa13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 SFMBT1Q9UHJ3 866 aa13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 AGO1Q9UL18 857 aaKnown RBP13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 ZNF292O60281 2723 aa13.3□□□□□ -0.28
NPLOC4-213ENST00000573519 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 RHOBTB1O94844 696 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 EPN2O95208 641 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 CYBBP04839 570 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 HNRNPLP14866 589 aaKnown RBP eCLIP13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 SDHBP21912 280 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 MTIF2P46199 727 aaKnown RBP13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 DAOAP59103 153 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 CNGA2Q16280 664 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 DPCR1Q3MIW9 517 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 PLK5Q496M5 336 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 PKDCCQ504Y2 493 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 PMF1Q6P1K2 205 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 TOGARAM2Q6ZUX3 1019 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 BHLHA9Q7RTU4 235 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 ERMP1Q7Z2K6 904 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 FMNL3Q8IVF7 1028 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 CHPFQ8IZ52 775 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 C12orf50Q8NA57 414 aaPredicted RBP13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 MLKLQ8NB16 471 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 GOLGA1Q92805 767 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 PLD4Q96BZ4 506 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 ERLEC1Q96DZ1 483 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 LOXL4Q96JB6 756 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 KREMEN1Q96MU8 473 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 ZSWIM1Q9BR11 485 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 MIS12Q9H081 205 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 DUSP15Q9H1R2 295 aaPredicted RBP13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 CNGB3Q9NQW8 809 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 ABCC13Q9NSE7 274 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 WDR87Q6ZQQ6 2873 aa13.29□□□□□ -0.28
NPLOC4-213ENST00000573519 ADAM23O75077 832 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 HOXB2P14652 356 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 USP8P40818 1118 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 HARS2P49590 506 aaKnown RBP13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 MFAP3P55082 362 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 CREB5Q02930 508 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 SF3A2Q15428 464 aaKnown RBP13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 ARHGAP44Q17R89 818 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 AASDHQ4L235 1098 aaPredicted RBP13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 EGFLAMQ63HQ2 1017 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 SDE2Q6IQ49 451 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 GJB7Q6PEY0 223 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 RASSF3Q86WH2 238 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 IRF2BP1Q8IU81 584 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 KCNV2Q8TDN2 545 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 CLEC4CQ8WTT0 213 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 DDI1Q8WTU0 396 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 SLC35F5Q8WV83 523 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 RLN3Q8WXF3 142 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 ZC3H10Q96K80 434 aaKnown RBP13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 SMOC1Q9H4F8 434 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 ST7Q9NRC1 585 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 DLL3Q9NYJ7 618 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 ATG2BQ96BY7 2078 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 FAM186AA6NE01 2351 aa13.28□□□□□ -0.28
NPLOC4-213ENST00000573519 GVINP1Q7Z2Y8 2422 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 RIF1Q5UIP0 2472 aaKnown RBP13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 PRRT4C9JH25 899 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 ZBTB24O43167 697 aaPredicted RBP13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 MAP3K13O43283 966 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 MSI1O43347 362 aaKnown RBP13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 MED7O43513 233 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 GDF9O60383 454 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 TSPAN3O60637 253 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 LETM1O95202 739 aaPredicted RBP13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 CHRM1P11229 460 aaPredicted RBP13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 SLC9A1P19634 815 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 BCKDHBP21953 392 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 NTSR1P30989 418 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 MPLP40238 635 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 ZNF132P52740 706 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 ATXN1P54253 815 aaKnown RBP13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 HSP90AA4PQ58FG1 418 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 FYB2Q5VWT5 728 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 TRIM65Q6PJ69 517 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 GBP6Q6ZN66 633 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 C11orf74Q86VG3 221 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 SPACA7Q96KW9 195 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 ACOX2Q99424 681 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 STARD13Q9Y3M8 1113 aa13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 HBS1LQ9Y450 684 aaKnown RBP13.27□□□□□ -0.29
NPLOC4-213ENST00000573519 GOLGA6L22H0YM25 854 aa13.26□□□□□ -0.29
NPLOC4-213ENST00000573519 THAP12O43422 761 aa13.26□□□□□ -0.29
NPLOC4-213ENST00000573519 FOXD2O60548 495 aaPredicted RBP13.26□□□□□ -0.29
NPLOC4-213ENST00000573519 GABBR2O75899 941 aa13.26□□□□□ -0.29
NPLOC4-213ENST00000573519 PENKP01210 267 aaPredicted RBP13.26□□□□□ -0.29
NPLOC4-213ENST00000573519 LTFP02788 710 aa13.26□□□□□ -0.29
NPLOC4-213ENST00000573519 CISD3P0C7P0 127 aa13.26□□□□□ -0.29
NPLOC4-213ENST00000573519 PTPRZ1P23471 2315 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms