RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 NAP1L1P55209 391 aaKnown RBP17.3■□□□□ 0.36
VPS4A-202ENST00000562754 CES5AQ6NT32 575 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 C11orf63Q6NUN7 778 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 KLHDC10Q6PID8 442 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 RNF10Q8N5U6 811 aaKnown RBP17.3■□□□□ 0.36
VPS4A-202ENST00000562754 ARL14EPQ8N8R7 260 aaPredicted RBP17.3■□□□□ 0.36
VPS4A-202ENST00000562754 MAB21L3Q8N8X9 362 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 FAM172AQ8WUF8 416 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 CDK5RAP1Q96SZ6 601 aaKnown RBP17.3■□□□□ 0.36
VPS4A-202ENST00000562754 SLC46A2Q9BY10 475 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 FAM204AQ9H8W3 233 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 MARCH2Q9P0N8 246 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 HYOU1Q9Y4L1 999 aa17.3■□□□□ 0.36
VPS4A-202ENST00000562754 SYNJ2BP-COX16A0A087WUM0 186 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 GOLGA6L9A6NEM1 432 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 M0QYT0 321 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 LRCH4O75427 683 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 PALMO75781 387 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 ENDOD1O94919 500 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 TCF4P15884 667 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 KCNA5P22460 613 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 ATP5C1P36542 298 aaKnown RBP17.29■□□□□ 0.36
VPS4A-202ENST00000562754 HDAC4P56524 1084 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 EIF4EBP2Q13542 120 aaPredicted RBP17.29■□□□□ 0.36
VPS4A-202ENST00000562754 PIGHQ14442 188 aaPredicted RBP17.29■□□□□ 0.36
VPS4A-202ENST00000562754 SKIV2LQ15477 1246 aaKnown RBP17.29■□□□□ 0.36
VPS4A-202ENST00000562754 ARHGAP15Q53QZ3 475 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 ATAT1Q5SQI0 421 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 GET4Q7L5D6 327 aaPredicted RBP17.29■□□□□ 0.36
VPS4A-202ENST00000562754 STRADAQ7RTN6 431 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 ZSCAN30Q86W11 494 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 NPAS3Q8IXF0 933 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 SUSD6Q92537 303 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 PGAP3Q96FM1 320 aaPredicted RBP17.29■□□□□ 0.36
VPS4A-202ENST00000562754 ZFRQ96KR1 1074 aaKnown RBP17.29■□□□□ 0.36
VPS4A-202ENST00000562754 RIPOR3Q96MK2 946 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 CYP2S1Q96SQ9 504 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 TASP1Q9H6P5 420 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 PIGVQ9NUD9 493 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 DDIT4Q9NX09 232 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 COX16Q9P0S2 106 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 DNMT3LQ9UJW3 386 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 USTQ9Y2C2 406 aa17.29■□□□□ 0.36
VPS4A-202ENST00000562754 USP15Q9Y4E8 981 aaPredicted RBP17.29■□□□□ 0.36
VPS4A-202ENST00000562754 TRAV19A0A0A6YYK7 116 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 GRXCR2A6NFK2 248 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 MBL2P11226 248 aaPredicted RBP17.28■□□□□ 0.36
VPS4A-202ENST00000562754 PFKLP17858 780 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 DDX6P26196 483 aaKnown RBP eCLIP17.28■□□□□ 0.36
VPS4A-202ENST00000562754 RDXP35241 583 aaKnown RBP17.28■□□□□ 0.36
VPS4A-202ENST00000562754 MTHFRP42898 656 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 DEUP1Q05D60 604 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 NME3Q13232 169 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 IFI16Q16666 785 aaKnown RBP17.28■□□□□ 0.36
VPS4A-202ENST00000562754 SLFN11Q7Z7L1 901 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 TADA2BQ86TJ2 420 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 MIB1Q86YT6 1006 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 CALR3Q96L12 384 aaKnown RBP17.28■□□□□ 0.36
VPS4A-202ENST00000562754 ZSWIM3Q96MP5 696 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 SERPINB11Q96P15 392 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 PEBP4Q96S96 227 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 KLF16Q9BXK1 252 aaPredicted RBP17.28■□□□□ 0.36
VPS4A-202ENST00000562754 POMKQ9H5K3 350 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 LCMT1Q9UIC8 334 aa17.28■□□□□ 0.36
VPS4A-202ENST00000562754 SLC12A8A0AV02 714 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 SOBPA7XYQ1 873 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 IGLV3-27P01718 113 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 CKMP06732 381 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 HDCP19113 662 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 COMTP21964 271 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 TAS2R40P59535 323 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 SLC7A9P82251 487 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 NNTQ13423 1086 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 CBX2Q14781 532 aaPredicted RBP17.27■□□□□ 0.36
VPS4A-202ENST00000562754 ACAP1Q15027 740 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 TRIP4Q15650 581 aaPredicted RBP17.27■□□□□ 0.36
VPS4A-202ENST00000562754 CYP4V2Q6ZWL3 525 aaPredicted RBP17.27■□□□□ 0.36
VPS4A-202ENST00000562754 DAAM2Q86T65 1068 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 FAM131BQ86XD5 332 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.27■□□□□ 0.36
VPS4A-202ENST00000562754 ADAMTS19Q8TE59 1207 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 WBP2Q969T9 261 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 SLC39A13Q96H72 371 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 FCRL2Q96LA5 508 aaPredicted RBP17.27■□□□□ 0.36
VPS4A-202ENST00000562754 NACA2Q9H009 215 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 SMG9Q9H0W8 520 aaKnown RBP17.27■□□□□ 0.36
VPS4A-202ENST00000562754 SLITRK6Q9H5Y7 841 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 SMPD4Q9NXE4 827 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 CPQQ9Y646 472 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 ALG6Q9Y672 507 aa17.27■□□□□ 0.36
VPS4A-202ENST00000562754 PRAMEF12O95522 483 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 FTCDO95954 541 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 IL1R2P27930 398 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 MIPP30301 263 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 PCK1P35558 622 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 CXCR3P49682 368 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 TBX4P57082 545 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 ZXDBP98169 803 aa17.26■□□□□ 0.35
VPS4A-202ENST00000562754 SLC25A11Q02978 314 aaKnown RBP17.26■□□□□ 0.35
VPS4A-202ENST00000562754 SMAD4Q13485 552 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms