RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 IGSF21Q96ID5 467 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 PBKQ96KB5 322 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 TSNARE1Q96NA8 513 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 RAD9AQ99638 391 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 MYOCQ99972 504 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 C11orf84Q9BUA3 381 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-209ENST00000560637 PARD6BQ9BYG5 372 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 CCSER2Q9H7U1 834 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 SAYSD1Q9NPB0 183 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 CRTAC1Q9NQ79 661 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 LMCD1Q9NZU5 365 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 CNTN3Q9P232 1028 aa5.65□□□□□ -1.5
VPS13C-209ENST00000560637 TBC1D3BA6NDS4 549 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 H0YGN5 161 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 TEX28O15482 410 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 PAPSS1O43252 624 aaPredicted RBP5.65□□□□□ -1.51
VPS13C-209ENST00000560637 ZSCAN5DPP0CG00 497 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 TCF4P15884 667 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 ATP1A2P50993 1020 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 MAXP61244 160 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 ST8SIA6P61647 398 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 ITIH3Q06033 890 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 POU5F1BQ06416 359 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 PRPSAP1Q14558 356 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 FAM187BQ17R55 369 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 MAP3K21Q5TCX8 1036 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 PPP1R2P3Q6NXS1 205 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 ITIH5Q86UX2 942 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 MYLK4Q86YV6 388 aaPredicted RBP5.65□□□□□ -1.51
VPS13C-209ENST00000560637 CCDC110Q8TBZ0 833 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 GRK7Q8WTQ7 553 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 RAPGEF5Q92565 580 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 ALKBH8Q96BT7 664 aaKnown RBP5.65□□□□□ -1.51
VPS13C-209ENST00000560637 UROC1Q96N76 676 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 ZSWIM1Q9BR11 485 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 XYLT2Q9H1B5 865 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 MLXIPLQ9NP71 852 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 PAK6Q9NQU5 681 aaPredicted RBP5.65□□□□□ -1.51
VPS13C-209ENST00000560637 VPS18Q9P253 973 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 CFAP97Q9P2B7 532 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 OR12D3Q9UGF7 316 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 SLC8A2Q9UPR5 921 aa5.65□□□□□ -1.51
VPS13C-209ENST00000560637 ARIH1Q9Y4X5 557 aaPredicted RBP5.65□□□□□ -1.51
VPS13C-209ENST00000560637 EFCAB14O75071 495 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 TUBB4AP04350 444 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 RHOCP08134 193 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 PIRTP0C851 137 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CSH1P0DML2 217 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CSH2P0DML3 217 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 GOT1P17174 413 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 ITGB8P26012 769 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 PBX1P40424 430 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MARSP56192 900 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MRPS5P82675 430 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 SEMG2Q02383 582 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 C1QBPQ07021 282 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 UPP1Q16831 310 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 PLEKHG4Q58EX7 1191 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CLEC20AQ6ZU45 233 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 DNAJB7Q7Z6W7 309 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 LRRTM3Q86VH5 581 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 ATP6V0D2Q8N8Y2 350 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 C3orf20Q8ND61 904 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 ZFYVE19Q96K21 471 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 SNRNP25Q9BV90 132 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 TSPYL1Q9H0U9 437 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 PTPRHQ9HD43 1115 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 NT5MQ9NPB1 228 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 TMLHEQ9NVH6 421 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 FBXL21Q9UKT6 434 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MAPK13O15264 365 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 GJB5O95377 273 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 PARNO95453 639 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 LSM8O95777 96 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CD48P09326 243 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 ETS1P14921 441 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CAPN2P17655 700 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 TPH1P17752 444 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CHRNB2P17787 502 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CST5P28325 142 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 NRLP54845 237 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 SLC12A2P55011 1212 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 SARNPP82979 210 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 BYSLQ13895 437 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 P3H1Q32P28 736 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CCDC14Q49A88 953 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 BOLA3Q53S33 107 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 COBLL1Q53SF7 1204 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 IZUMO3Q5VZ72 239 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 LINGO4Q6UY18 593 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 TADA2BQ86TJ2 420 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 ZBED8Q8IZ13 594 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 GSDMBQ8TAX9 411 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 SPPL2BQ8TCT7 592 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 GRIN3AQ8TCU5 1115 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 RPL10LQ96L21 214 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 TTC25Q96NG3 672 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 KLHL5Q96PQ7 755 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MAGEB5Q9BZ81 275 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms