RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 RNASE9P60153 205 aaKnown RBP10.51□□□□□ -0.73
USP3-216ENST00000559873 RING1Q06587 406 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 PTP4A2Q12974 167 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 PDGFRLQ15198 375 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 TRIP4Q15650 581 aaPredicted RBP10.51□□□□□ -0.73
USP3-216ENST00000559873 C2CD6Q53TS8 623 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 TANGO2Q6ICL3 276 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 H2AFVQ71UI9 128 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 TAC4Q86UU9 113 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 UNC45BQ8IWX7 931 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 UBALD2Q8IYN6 164 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 DNASE1L2Q92874 299 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 OTUB2Q96DC9 234 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 MCEEQ96PE7 176 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 CHP1Q99653 195 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 KLF16Q9BXK1 252 aaPredicted RBP10.51□□□□□ -0.73
USP3-216ENST00000559873 RNF38Q9H0F5 515 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 BRD9Q9H8M2 597 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 DDIT4Q9NX09 232 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 TAS2R14Q9NYV8 317 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 CFAP97Q9P2B7 532 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 LCMT1Q9UIC8 334 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 NUDT5Q9UKK9 219 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 NAALADL1Q9UQQ1 740 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 CCL26Q9Y258 94 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 TLR6Q9Y2C9 796 aa10.51□□□□□ -0.73
USP3-216ENST00000559873 HELZP42694 1942 aaKnown RBP10.5□□□□□ -0.73
USP3-216ENST00000559873 MDM4O15151 490 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 IRAK2O43187 625 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 NFATC1O95644 943 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 LATS1O95835 1130 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 TBX18O95935 607 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 PTMAP06454 111 aaKnown RBP10.5□□□□□ -0.73
USP3-216ENST00000559873 ASGR2P07307 311 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 TMEM253P0C7T8 217 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 SRFP11831 508 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 PDGFRAP16234 1089 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 GPD1P21695 349 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 GDI1P31150 447 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 FLT3P36888 993 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 PTPN9P43378 593 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 TBX4P57082 545 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 GPC5P78333 572 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 GRM2Q14416 872 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 ASTE1Q2TB18 679 aaPredicted RBP10.5□□□□□ -0.73
USP3-216ENST00000559873 SLC25A52Q3SY17 297 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 PLEKHA7Q6IQ23 1121 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 VITQ6UXI7 678 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 RNF135Q8IUD6 432 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 CPA6Q8N4T0 437 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 CSGALNACT1Q8TDX6 532 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 OSCP1Q8WVF1 389 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 ATP2A3Q93084 1043 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 RNF34Q969K3 372 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 EXOC4Q96A65 974 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 ZFRQ96KR1 1074 aaKnown RBP10.5□□□□□ -0.73
USP3-216ENST00000559873 NCAPGQ9BPX3 1015 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 DDX50Q9BQ39 737 aaKnown RBP10.5□□□□□ -0.73
USP3-216ENST00000559873 SPTLC3Q9NUV7 552 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 DUS2Q9NX74 493 aaKnown RBP10.5□□□□□ -0.73
USP3-216ENST00000559873 SLC12A6Q9UHW9 1150 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 TMEM59LQ9UK28 342 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 INTUQ9ULD6 942 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 NENFQ9UMX5 172 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 DUSP12Q9UNI6 340 aa10.5□□□□□ -0.73
USP3-216ENST00000559873 TYW5A2RUC4 315 aaKnown RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 EIF3CLB5ME19 914 aaKnown RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 M0QYT0 321 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 ARHGAP6O43182 974 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 ATMINO43313 823 aaPredicted RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 MSI1O43347 362 aaKnown RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 STC2O76061 302 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 NDUFA10O95299 355 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 LCA5LO95447 670 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 FYNP06241 537 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 HMBSP08397 361 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 CCR1P32246 355 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 RDXP35241 583 aaKnown RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 SLC11A2P49281 568 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 GALCP54803 685 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 KRT83P78385 493 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 AMPD2Q01433 879 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 DEUP1Q05D60 604 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 NR1H3Q13133 447 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 MAMLD1Q13495 774 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 TAF5Q15542 800 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 ARL13BQ3SXY8 428 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 BRMS1LQ5PSV4 323 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 ACBD5Q5T8D3 534 aaPredicted RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 SYPL2Q5VXT5 272 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 C1orf228Q6PIY5 440 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 POTEHQ6S545 545 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 STRADAQ7RTN6 431 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 SLC44A3Q8N4M1 653 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 FNIP1Q8TF40 1166 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 RXFP2Q8WXD0 754 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 RSAD2Q8WXG1 361 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 RSPRY1Q96DX4 576 aa10.49□□□□□ -0.73
USP3-216ENST00000559873 PGAP3Q96FM1 320 aaPredicted RBP10.49□□□□□ -0.73
USP3-216ENST00000559873 MSANTD3Q96H12 275 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms