RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 FOXB2Q5VYV0 432 aa16.86■□□□□ 0.29
SHMT2-232ENST00000557487 SLC9A4Q6AI14 798 aa16.86■□□□□ 0.29
SHMT2-232ENST00000557487 MPZL3Q6UWV2 235 aa16.86■□□□□ 0.29
SHMT2-232ENST00000557487 PIWIL2Q8TC59 973 aaKnown RBP16.86■□□□□ 0.29
SHMT2-232ENST00000557487 FAM172AQ8WUF8 416 aa16.86■□□□□ 0.29
SHMT2-232ENST00000557487 TEPSINQ96N21 525 aa16.86■□□□□ 0.29
SHMT2-232ENST00000557487 EBNA1BP2Q99848 306 aaKnown RBP16.86■□□□□ 0.29
SHMT2-232ENST00000557487 MECRQ9BV79 373 aa16.86■□□□□ 0.29
SHMT2-232ENST00000557487 PIDD1Q9HB75 910 aa16.86■□□□□ 0.29
SHMT2-232ENST00000557487 KIAA1257Q9ULG3 409 aa16.86■□□□□ 0.29
SHMT2-232ENST00000557487 PCDHA11Q9Y5I1 949 aa16.86■□□□□ 0.29
SHMT2-232ENST00000557487 C2CD4BA6NLJ0 364 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 PRR5-ARHGAP8B1AHC4 643 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 MAP3K13O43283 966 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 AVILO75366 819 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 MICAL2O94851 1124 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 CPOXP36551 454 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 BCAR1P56945 870 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 INHBEP58166 350 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 ARHGAP8P85298 464 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 ASPHQ12797 758 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 MTM1Q13496 603 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 TAF5Q15542 800 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 FAM102AQ5T9C2 384 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-232ENST00000557487 SCARA3Q6AZY7 606 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 NPNTQ6UXI9 565 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 UNC5AQ6ZN44 842 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 TSHZ1Q6ZSZ6 1077 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 DHDDSQ86SQ9 333 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 PPP1R14CQ8TAE6 165 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 PRPF31Q8WWY3 499 aaKnown RBP16.85■□□□□ 0.29
SHMT2-232ENST00000557487 ATP2A3Q93084 1043 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 TMEM176AQ96HP8 235 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 PEBP4Q96S96 227 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 SLC13A1Q9BZW2 595 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 VRTNQ9H8Y1 702 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 IFT122Q9HBG6 1241 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 NDUFA13Q9P0J0 144 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 TJP2Q9UDY2 1190 aa16.85■□□□□ 0.29
SHMT2-232ENST00000557487 APOBEC2Q9Y235 224 aaKnown RBP16.85■□□□□ 0.29
SHMT2-232ENST00000557487 A0A088AWK7 358 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 BUD23O43709 281 aaKnown RBP16.84■□□□□ 0.29
SHMT2-232ENST00000557487 GLRA3O75311 464 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 CILPO75339 1184 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 ZFXP17010 805 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-232ENST00000557487 GRK2P25098 689 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 GPD2P43304 727 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 ALDH18A1P54886 795 aaKnown RBP16.84■□□□□ 0.29
SHMT2-232ENST00000557487 POLE2P56282 527 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 SP2Q02086 613 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 BTKQ06187 659 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 CUL3Q13618 768 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 CYP4V2Q6ZWL3 525 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-232ENST00000557487 SDCCAG8Q86SQ7 713 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-232ENST00000557487 NCAPG2Q86XI2 1143 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 PHC3Q8NDX5 983 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 AFG1LQ8WV93 481 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 NLRP4Q96MN2 994 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 ZNF670Q9BS34 389 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 PCMTD2Q9NV79 361 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 DNAJC28Q9NX36 388 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 NXF1Q9UBU9 619 aaKnown RBP16.84■□□□□ 0.29
SHMT2-232ENST00000557487 TBC1D30Q9Y2I9 924 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 GCATO75600 419 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 BAG2O95816 211 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 APRTP07741 180 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 PRDX6P30041 224 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 COPAP53621 1224 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 MMRN1Q13201 1228 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 BIRC2Q13490 618 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 DGKZQ13574 1117 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 STILQ15468 1287 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 MAP1SQ66K74 1059 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-232ENST00000557487 PDSS2Q86YH6 399 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 CCNJLQ8IV13 435 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 NME8Q8N427 588 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 OR6Y1Q8NGX8 325 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 FBXO27Q8NI29 283 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 SIGLEC10Q96LC7 697 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 TTC1Q99614 292 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 PLAC1Q9HBJ0 212 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 COMMD3-BMI1R4GMX3 469 aa16.84■□□□□ 0.29
SHMT2-232ENST00000557487 PHIPQ8WWQ0 1821 aa16.83■□□□□ 0.29
SHMT2-232ENST00000557487 C19orf81C9J6K1 198 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 M0QYV0 167 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 PEX1O43933 1283 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 UBTFL6P0CB48 400 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-232ENST00000557487 CSH1P0DML2 217 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 CSH2P0DML3 217 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 MLNP12872 115 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 ALOX15P16050 662 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-232ENST00000557487 PDGFRAP16234 1089 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 L1CAMP32004 1257 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 STAT5BP51692 787 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 INSCQ1MX18 579 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 LIN52Q52LA3 116 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 RABGAP1LQ5R372 815 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 STEAP4Q687X5 459 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 C1orf228Q6PIY5 440 aa16.83■□□□□ 0.28
SHMT2-232ENST00000557487 MARK2Q7KZI7 788 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms