RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 KLF8O95600 359 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-230ENST00000557427 DDX6P26196 483 aaKnown RBP eCLIP13.23□□□□□ -0.29
SHMT2-230ENST00000557427 MARSP56192 900 aaKnown RBP13.23□□□□□ -0.29
SHMT2-230ENST00000557427 SNRPFP62306 86 aaKnown RBP13.23□□□□□ -0.29
SHMT2-230ENST00000557427 ZNF33AQ06730 810 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 USP4Q13107 963 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 PCSK4Q6UW60 755 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 SLC41A1Q8IVJ1 513 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 TTC16Q8NEE8 873 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 CXorf38Q8TB03 319 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 HMGB4Q8WW32 186 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 ATP2A3Q93084 1043 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 HPDLQ96IR7 371 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 TTYH3Q9C0H2 523 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 ZCWPW1Q9H0M4 648 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 KCTD10Q9H3F6 313 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 ITGA11Q9UKX5 1188 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 PCOLCE2Q9UKZ9 415 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 SNX9Q9Y5X1 595 aa13.23□□□□□ -0.29
SHMT2-230ENST00000557427 PES1O00541 588 aaKnown RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 CST3P01034 146 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 CCDC175P0C221 793 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 HAPLN1P10915 354 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 ACAT1P24752 427 aaKnown RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 KRT9P35527 623 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 TIE1P35590 1138 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 ABCG1P45844 678 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 GPR15P49685 360 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 ETF1P62495 437 aaKnown RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 MRPS21P82921 87 aaKnown RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 RPL6Q02878 288 aaKnown RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 CYP24A1Q07973 514 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 MYO1EQ12965 1108 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 SYCP1Q15431 976 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 RAD9BQ6WBX8 426 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 TRAPPC11Q7Z392 1133 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 PDCL2Q8N4E4 241 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 OR8K1Q8NGG5 319 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 CCDC26Q8TAB7 109 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 DCBLD2Q96PD2 775 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 DNAJC7Q99615 494 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 NDST4Q9H3R1 872 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 CGNQ9P2M7 1197 aaKnown RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 L1RE1Q9UN81 338 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 TRAF3IP3Q9Y228 551 aa13.22□□□□□ -0.29
SHMT2-230ENST00000557427 LUC7L2Q9Y383 392 aaKnown RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 GOLGA4Q13439 2230 aaKnown RBP13.22□□□□□ -0.29
SHMT2-230ENST00000557427 UNC79Q9P2D8 2635 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 TSC2P49815 1807 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 TCRBV21S2A2A0A5A6 115 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 FAM149AA5PLN7 773 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 SOWAHDA6NJG2 315 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 RNF225M0QZC1 329 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-230ENST00000557427 HCRTO43612 131 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 SYPP08247 313 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 ATXN1LP0C7T5 689 aaKnown RBP13.21□□□□□ -0.29
SHMT2-230ENST00000557427 KIR2DL1P43626 348 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-230ENST00000557427 SLC6A11P48066 632 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 IFNAR2P48551 515 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 CASP4P49662 377 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 ZBED6P86452 979 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 ZXDBP98169 803 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 TSPY1Q01534 308 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 PSMD6Q15008 389 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 TAF12Q16514 161 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 TRIM65Q6PJ69 517 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 WDR49Q8IV35 697 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 DCP1BQ8IZD4 617 aaKnown RBP13.21□□□□□ -0.29
SHMT2-230ENST00000557427 LRRC52Q8N7C0 313 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 LSM14AQ8ND56 463 aaKnown RBP13.21□□□□□ -0.29
SHMT2-230ENST00000557427 GOLGA5Q8TBA6 731 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 ZNF516Q92618 1163 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 MMS19Q96T76 1030 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 EDEM3Q9BZQ6 932 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 TMLHEQ9NVH6 421 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 DDX43Q9NXZ2 648 aaKnown RBP13.21□□□□□ -0.29
SHMT2-230ENST00000557427 ABI2Q9NYB9 513 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-230ENST00000557427 BCCIPQ9P287 314 aaKnown RBP eCLIP13.21□□□□□ -0.29
SHMT2-230ENST00000557427 ADGRG1Q9Y653 693 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 SCN1AP35498 2009 aa13.21□□□□□ -0.29
SHMT2-230ENST00000557427 ANK1P16157 1881 aa13.21□□□□□ -0.3
SHMT2-230ENST00000557427 PDXKO00764 312 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 CTIFO43310 598 aaKnown RBP13.2□□□□□ -0.3
SHMT2-230ENST00000557427 CALUO43852 315 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-230ENST00000557427 PHACTR2O75167 634 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 PDGFRBP09619 1106 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 TRPC3Q13507 836 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 NFIL3Q16649 462 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 SOWAHAQ2M3V2 549 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 TSR1Q2NL82 804 aaKnown RBP13.2□□□□□ -0.3
SHMT2-230ENST00000557427 SDHAF4Q5VUM1 108 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 OSTM1Q86WC4 334 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 C12orf56Q8IXR9 622 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 TMEM86AQ8N2M4 240 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 PGBD3Q8N328 593 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 BAHD1Q8TBE0 780 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-230ENST00000557427 ZNF592Q92610 1267 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 MRPS31Q92665 395 aaKnown RBP13.2□□□□□ -0.3
SHMT2-230ENST00000557427 CGRRF1Q99675 332 aa13.2□□□□□ -0.3
SHMT2-230ENST00000557427 PI4K2AQ9BTU6 479 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms