RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ORC1	Q13415	861 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	STK38	Q15208	465 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	E2F5	Q15329	346 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	KNOP1	Q1ED39	458 aa	Known RBP	13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	HLA-B	Q31612	363 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	DCAF12L1	Q5VU92	463 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689		Q6ZNB5	142 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	DBX2	Q6ZNG2	339 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	UNC13D	Q70J99	1090 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	TMPRSS7	Q7RTY8	843 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	TADA2B	Q86TJ2	420 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	UNC93A	Q86WB7	457 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	ZCCHC9	Q8N567	271 aa	Known RBP	13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	PLEKHO2	Q8TD55	490 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	RHBDD1	Q8TEB9	315 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	UCMA	Q8WVF2	138 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	PRCC	Q92733	491 aa	Predicted RBP	13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	CDC6	Q99741	560 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	THAP10	Q9P2Z0	257 aa	Predicted RBP	13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	TFIP11	Q9UBB9	837 aa	Known RBP	13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	NUDT5	Q9UKK9	219 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	ZNF510	Q9Y2H8	683 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	RAX	Q9Y2V3	346 aa		13.33	□□□□□ -0.28
SHMT2-223	ENST00000556689	FASN	P49327	2511 aa	Known RBP	13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689		A0A1W2PQH9	124 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	LRRIQ3	A6PVS8	624 aa	Predicted RBP	13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	HHLA1	C9JL84	531 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	MDM4	O15151	490 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	CYP26A1	O43174	497 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	CILP	O75339	1184 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	STC2	O76061	302 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	VNN1	O95497	513 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	RPN1	P04843	607 aa	Known RBP	13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	ACADM	P11310	421 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	ADORA2B	P29275	332 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	CHKA	P35790	457 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	IL12RB1	P42701	662 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	NASP	P49321	788 aa	Predicted RBP	13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	EHHADH	Q08426	723 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	ENPP2	Q13822	863 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	SUZ12	Q15022	739 aa	Known RBP	13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	GEN1	Q17RS7	908 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	C10orf120	Q5SQS8	335 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	GPRIN1	Q7Z2K8	1008 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	LINC00301	Q8NCQ3	95 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	GOLGA5	Q8TBA6	731 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	JAKMIP2	Q96AA8	810 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	CYFIP2	Q96F07	1278 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	LRIG1	Q96JA1	1093 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	HNRNPAB	Q99729	332 aa	Known RBP	13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	NMUR1	Q9HB89	426 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	SLC39A2	Q9NP94	309 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	SCUBE2	Q9NQ36	999 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	FAM49B	Q9NUQ9	324 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	EIF2B4	Q9UI10	523 aa	Known RBP	13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	PCDHGB2	Q9Y5G2	931 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	PCDHA5	Q9Y5H7	936 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	CEP192	Q8TEP8	1941 aa		13.32	□□□□□ -0.28
SHMT2-223	ENST00000556689	ADAMTS20	P59510	1910 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	EIF4E1B	A6NMX2	242 aa	Known RBP	13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	SPTLC2	O15270	562 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	FLRT2	O43155	660 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	STX6	O43752	255 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	PPP6R2	O75170	966 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	PENK	P01210	267 aa	Predicted RBP	13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	KLKB1	P03952	638 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	ATXN1L	P0C7T5	689 aa	Known RBP	13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	PSEN1	P49768	467 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	MFAP3	P55082	362 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	COG7	P83436	770 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	BNC1	Q01954	994 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	FYB2	Q5VWT5	728 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	CLEC20A	Q6ZU45	233 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	GALNT15	Q8N3T1	639 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	ZNF276	Q8N554	614 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	TAF4B	Q92750	862 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	P2RY11	Q96G91	374 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	DCLK3	Q9C098	648 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	PNPLA8	Q9NP80	782 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	ELOVL2	Q9NXB9	296 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	TOR4A	Q9NXH8	423 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	DKK4	Q9UBT3	224 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	NAGPA	Q9UK23	515 aa		13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689	FNDC3A	Q9Y2H6	1198 aa	Known RBP	13.31	□□□□□ -0.28
SHMT2-223	ENST00000556689		A0A1B0GVT2	93 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	PVALEF	A0A1B0GWK0	134 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	TRABD2B	A6NFA1	517 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	GOLGA8CP	A6NN73	597 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	TIMM44	O43615	452 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	IGLV3-19	P01714	112 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	RALA	P11233	206 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	ANP32A	P39687	249 aa	Known RBP	13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	KIF11	P52732	1056 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	CYP4F3	Q08477	520 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	ZNF234	Q14588	700 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	ZACN	Q401N2	412 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	SCD5	Q86SK9	330 aa		13.3	□□□□□ -0.28
SHMT2-223	ENST00000556689	C1orf216	Q8TAB5	229 aa		13.3	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms