RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 UBASH3AP57075 661 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 ZNF445P59923 1031 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 CDR2Q01850 454 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 TCF15Q12870 199 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 SMYD5Q6GMV2 418 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 OR6B2Q6IFH4 312 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 PKN3Q6P5Z2 889 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 OLFML1Q6UWY5 402 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 MAMSTRQ6ZN01 415 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 IRF2BP2Q7Z5L9 587 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 TAC4Q86UU9 113 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 DENND1CQ8IV53 801 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 DTWD2Q8NBA8 298 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 RNF139Q8WU17 664 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 CLDN23Q96B33 292 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 ADAM33Q9BZ11 813 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 XPO4Q9C0E2 1151 aaKnown RBP12.91□□□□□ -0.34
SYNE2-214ENST00000554928 PDCL3Q9H2J4 239 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 LMAN1LQ9HAT1 526 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 ABCC13Q9NSE7 274 aa12.91□□□□□ -0.34
SYNE2-214ENST00000554928 AGO1Q9UL18 857 aaKnown RBP12.91□□□□□ -0.34
SYNE2-214ENST00000554928 TRDMT1O14717 391 aaKnown RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 GJB6O95452 261 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 CYP1A1P04798 512 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 NCAM1P13591 858 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 TFE3P19532 575 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 VASPP50552 380 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 MLLT6P55198 1093 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 CCINQ13939 588 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 TRIP4Q15650 581 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 TMEM196Q5HYL7 178 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 OTUD1Q5VV17 481 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 TRNP1Q6NT89 227 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 TPGS1Q6ZTW0 290 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 CACNA2D4Q7Z3S7 1137 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 TADA2BQ86TJ2 420 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 XYLT1Q86Y38 959 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 DNAAF5Q86Y56 855 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 MAML2Q8IZL2 1156 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 DEFB106AQ8N104 65 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 NAT16Q8N8M0 369 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 TMEM35BQ8NCS4 154 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 SLC30A5Q8TAD4 765 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 BHMTQ93088 406 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 MYEOVQ96EZ4 313 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 CDK5RAP1Q96SZ6 601 aaKnown RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 SYT11Q9BT88 431 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 SPHK2Q9NRA0 654 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 PLK2Q9NYY3 685 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 CALCOCO1Q9P1Z2 691 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 TBC1D14Q9P2M4 693 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 XPO7Q9UIA9 1087 aaKnown RBP12.9□□□□□ -0.34
SYNE2-214ENST00000554928 DAAM1Q9Y4D1 1078 aa12.9□□□□□ -0.34
SYNE2-214ENST00000554928 GOLGA6L7A0A1B0GV03 622 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 SLC9A3R1O14745 358 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-214ENST00000554928 IGLV3-27P01718 113 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 ADH5P11766 374 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 UNGP13051 313 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-214ENST00000554928 GABRB2P47870 512 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 TPM4P67936 248 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 COG7P83436 770 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 SLC6A3Q01959 620 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 KDSRQ06136 332 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 PTP4A2Q12974 167 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 MTAPQ13126 283 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 MMS22LQ6ZRQ5 1243 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 GAS2L3Q86XJ1 694 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 ETFBKMTQ8IXQ9 262 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 KIAA1958Q8N8K9 716 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 MSANTD3Q96H12 275 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 FCRL2Q96LA5 508 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-214ENST00000554928 SLC2A13Q96QE2 648 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 AGPAT1Q99943 283 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 P2RY13Q9BPV8 354 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 OSBPL6Q9BZF3 934 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 OLA1Q9NTK5 396 aaKnown RBP12.89□□□□□ -0.35
SYNE2-214ENST00000554928 TAS2R14Q9NYV8 317 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 LSM7Q9UK45 103 aaKnown RBP12.89□□□□□ -0.35
SYNE2-214ENST00000554928 STRIP2Q9ULQ0 834 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 CLEC4EQ9ULY5 219 aa12.89□□□□□ -0.35
SYNE2-214ENST00000554928 MRPS17Q9Y2R5 130 aaKnown RBP12.89□□□□□ -0.35
SYNE2-214ENST00000554928 H0Y858 1186 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 GOLGA8SH3BPF8 625 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 LSM8O95777 96 aaKnown RBP12.88□□□□□ -0.35
SYNE2-214ENST00000554928 IGLV3-25P01717 112 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 CHRM1P11229 460 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-214ENST00000554928 SKILP12757 684 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 SGSHP51688 502 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 YWHAZP63104 245 aaKnown RBP12.88□□□□□ -0.35
SYNE2-214ENST00000554928 GOLGA8FQ08AF8 430 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 GOLGA8DPQ0D2H9 430 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 CLEC16AQ2KHT3 1053 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 ANO4Q32M45 955 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 NADSYN1Q6IA69 706 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 TSSK4Q6SA08 328 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 ERICH1Q86X53 443 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 ZNF677Q86XU0 584 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 PHTF2Q8N3S3 785 aa12.88□□□□□ -0.35
SYNE2-214ENST00000554928 IPO4Q8TEX9 1081 aaKnown RBP12.88□□□□□ -0.35
SYNE2-214ENST00000554928 CPLX3Q8WVH0 158 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms