RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 MAGEA4P43358 317 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 TUBP50607 506 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 LMNB2Q03252 620 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 AUHQ13825 339 aaKnown RBP12.14□□□□□ -0.47
SHMT2-212ENST00000554467 TAZQ16635 292 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 MSS51Q4VC12 460 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 LIMS2Q7Z4I7 341 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 ZBED8Q8IZ13 594 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 ZNF317Q96PQ6 595 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-212ENST00000554467 RNF157Q96PX1 679 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 LRRC4Q9HBW1 653 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 KCNK9Q9NPC2 374 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 ETNK2Q9NVF9 386 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 PCDH10Q9P2E7 1040 aa12.14□□□□□ -0.47
SHMT2-212ENST00000554467 A0A1B0GVG6 124 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 USP17L7P0C7H9 530 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 SULT1E1P49888 294 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 TKTL1P51854 596 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 GBE1Q04446 702 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 TRMT10CQ7L0Y3 403 aaKnown RBP12.13□□□□□ -0.47
SHMT2-212ENST00000554467 SLC26A9Q7LBE3 791 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 SIX6OS1Q8N1H7 587 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 PLD5Q8N7P1 536 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 CCDC63Q8NA47 563 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 CREBZFQ9NS37 354 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 SLC38A7Q9NVC3 462 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 NAALADL1Q9UQQ1 740 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 DRG1Q9Y295 367 aaKnown RBP12.13□□□□□ -0.47
SHMT2-212ENST00000554467 PYGLP06737 847 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 BCAR1P56945 870 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 PDIA2Q13087 525 aaKnown RBP12.13□□□□□ -0.47
SHMT2-212ENST00000554467 ACAP1Q15027 740 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 UPP1Q16831 310 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 FAM133BQ5BKY9 247 aaKnown RBP12.13□□□□□ -0.47
SHMT2-212ENST00000554467 RNASEH2BQ5TBB1 312 aaKnown RBP12.13□□□□□ -0.47
SHMT2-212ENST00000554467 AGBL2Q5U5Z8 902 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 DRICH1Q6PGQ1 229 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-212ENST00000554467 HACE1Q8IYU2 909 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 CYP4X1Q8N118 509 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 EDEM1Q92611 657 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 HNRNPABQ99729 332 aaKnown RBP12.13□□□□□ -0.47
SHMT2-212ENST00000554467 SMOQ99835 787 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 PRMT1Q99873 361 aaKnown RBP12.13□□□□□ -0.47
SHMT2-212ENST00000554467 ULBP1Q9BZM6 244 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 PCDH9Q9HC56 1237 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 AP4E1Q9UPM8 1137 aa12.13□□□□□ -0.47
SHMT2-212ENST00000554467 MYO18AQ92614 2054 aaKnown RBP12.13□□□□□ -0.47
SHMT2-212ENST00000554467 XPO1O14980 1071 aaKnown RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 KCNN4O15554 427 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 RTN3O95197 1032 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 FAM200BP0CF97 657 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 GOT1P17174 413 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 ROR1Q01973 937 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 MBTPS1Q14703 1052 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 FNBP1LQ5T0N5 605 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 RNF180Q86T96 592 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 ZCCHC9Q8N567 271 aaKnown RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 STK32AQ8WU08 396 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 CPT1BQ92523 772 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 TLCD1Q96CP7 247 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 KCTD15Q96SI1 283 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 ELAC2Q9BQ52 826 aaKnown RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 DPPA5A6NC42 116 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 YJEFN3A6XGL0 299 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 E7ENQ6 273 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 GABRDO14764 452 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 TMEM63AO94886 807 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 AMHP03971 560 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 AMPD1P23109 780 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 CYP2F1P24903 491 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 RBL1P28749 1068 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 ERMARDQ5T6L9 678 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 VPS37BQ9H9H4 285 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 CHST12Q9NRB3 414 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 INTS9Q9NV88 658 aaKnown RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 TMLHEQ9NVH6 421 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 POC1B-GALNT4F8VUJ3 575 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 DPYSL4O14531 572 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 AVILO75366 819 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 OR4Q2P0C623 313 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 BDNFP23560 247 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 L1CAMP32004 1257 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 BOLA3Q53S33 107 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 CWF19L1Q69YN2 538 aaKnown RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 RTN4RL1Q86UN2 441 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 FAM35AQ86V20 835 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 ZNF280BQ86YH2 543 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 DRAXINQ8NBI3 349 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 PCSK9Q8NBP7 692 aaKnown RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 ZMIZ2Q8NF64 920 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 GDAP1Q8TB36 358 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 PAIP2Q9BPZ3 127 aaKnown RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 RTP3Q9BQQ7 232 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 CEP41Q9BYV8 373 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 FAM124BQ9H5Z6 455 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 ABCF3Q9NUQ8 709 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 NOP53Q9NZM5 478 aaKnown RBP12.12□□□□□ -0.47
SHMT2-212ENST00000554467 GIT1Q9Y2X7 761 aa12.12□□□□□ -0.47
SHMT2-212ENST00000554467 ZNF638Q14966 1978 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms