RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 TRIML1Q8N9V2 468 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 SLC4A11Q8NBS3 891 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 HSPA12BQ96MM6 686 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 GABRG3Q99928 467 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 DNAI2Q9GZS0 605 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 CD248Q9HCU0 757 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 CLEC4EQ9ULY5 219 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 SLC6A14Q9UN76 642 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 STON1Q9Y6Q2 735 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 ABCA7Q8IZY2 2146 aa12.05□□□□□ -0.48
NEK3-204ENST00000552973 HELZP42694 1942 aaKnown RBP12.04□□□□□ -0.48
NEK3-204ENST00000552973 SPAARA0A1B0GVQ0 90 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 A0A1W2PQ27 194 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 A0A1W2PQ64 194 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 A0A1W2PQD8 194 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 CETN3O15182 167 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 NDUFS2O75306 463 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 ZNF217O75362 1048 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 EPB41P11171 864 aaKnown RBP12.04□□□□□ -0.48
NEK3-204ENST00000552973 GTF2H1P32780 548 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 COG7P83436 770 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 GFPT1Q06210 699 aaPredicted RBP12.04□□□□□ -0.48
NEK3-204ENST00000552973 GEN1Q17RS7 908 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 DCAF17Q5H9S7 520 aaPredicted RBP12.04□□□□□ -0.48
NEK3-204ENST00000552973 TCERG1LQ5VWI1 586 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 FYB2Q5VWT5 728 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 RSRC2Q7L4I2 434 aaKnown RBP12.04□□□□□ -0.48
NEK3-204ENST00000552973 FBXL13Q8NEE6 735 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 ERCC4Q92889 916 aaPredicted RBP12.04□□□□□ -0.48
NEK3-204ENST00000552973 MRGPRX1Q96LB2 322 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 SCAND2PQ9GZW5 306 aaPredicted RBP12.04□□□□□ -0.48
NEK3-204ENST00000552973 SLC32A1Q9H598 525 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 CLIC5Q9NZA1 410 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 MARCH2Q9P0N8 246 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 RALYQ9UKM9 306 aaKnown RBP12.04□□□□□ -0.48
NEK3-204ENST00000552973 AGO1Q9UL18 857 aaKnown RBP12.04□□□□□ -0.48
NEK3-204ENST00000552973 MYO16Q9Y6X6 1858 aa12.04□□□□□ -0.48
NEK3-204ENST00000552973 TSPAN3O60637 253 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 PENKP01210 267 aaPredicted RBP12.03□□□□□ -0.48
NEK3-204ENST00000552973 PROS1P07225 676 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 CHKAP35790 457 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 IL12RB1P42701 662 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 PRCPP42785 496 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 TKTL1P51854 596 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 MFAP3P55082 362 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 YWHAGP61981 247 aaKnown RBP eCLIP12.03□□□□□ -0.48
NEK3-204ENST00000552973 ENPEPQ07075 957 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 LRMPQ12912 555 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 GOLGA7BQ2TAP0 167 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 EDRF1Q3B7T1 1238 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 CBWD6Q4V339 395 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 CBWD3Q5JTY5 395 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 CBWD5Q5RIA9 395 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 PEAR1Q5VY43 1037 aaPredicted RBP12.03□□□□□ -0.48
NEK3-204ENST00000552973 ARHGAP17Q68EM7 881 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 UNQ6494/PRO21346Q6UXR6 183 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 CACUL1Q86Y37 369 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 HDDC3Q8N4P3 179 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 CEP76Q8TAP6 659 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 UBA3Q8TBC4 463 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 DDI1Q8WTU0 396 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 SORCS1Q8WY21 1168 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 SCNM1Q9BWG6 230 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 ULBP1Q9BZM6 244 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 FBXO10Q9UK96 956 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 WASF3Q9UPY6 502 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 ZNF510Q9Y2H8 683 aa12.03□□□□□ -0.48
NEK3-204ENST00000552973 KIAA1549LQ6ZVL6 1849 aa12.02□□□□□ -0.48
NEK3-204ENST00000552973 GFRA2O00451 464 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 STX10O60499 249 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 OPHN1O60890 802 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 SERPINF2P08697 491 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 CD19P15391 556 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 DPP6P42658 865 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 PMS1P54277 932 aaKnown RBP12.02□□□□□ -0.49
NEK3-204ENST00000552973 FAM193AP78312 1265 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 PDE4CQ08493 712 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 STARD3Q14849 445 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 FUT11Q495W5 492 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 RAB41Q5JT25 222 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 ANKRD40Q6AI12 368 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 ARHGAP18Q8N392 663 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 ZNF276Q8N554 614 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 MINDY1Q8N5J2 469 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 ANKRD52Q8NB46 1076 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 ZNF419Q96HQ0 510 aaPredicted RBP12.02□□□□□ -0.49
NEK3-204ENST00000552973 CDK5RAP1Q96SZ6 601 aaKnown RBP12.02□□□□□ -0.49
NEK3-204ENST00000552973 UBXN6Q9BZV1 441 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 DCLK3Q9C098 648 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 CIPCQ9C0C6 399 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 MKRN2Q9H000 416 aaKnown RBP12.02□□□□□ -0.49
NEK3-204ENST00000552973 PRDM16Q9HAZ2 1276 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 LRRC4Q9HBW1 653 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 CAPN10Q9HC96 672 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 THAP10Q9P2Z0 257 aaPredicted RBP12.02□□□□□ -0.49
NEK3-204ENST00000552973 SFMBT1Q9UHJ3 866 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 TSPAN16Q9UKR8 245 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 STRIP2Q9ULQ0 834 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 SLC27A6Q9Y2P4 619 aa12.02□□□□□ -0.49
NEK3-204ENST00000552973 ATP6V1DQ9Y5K8 247 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms