RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 RARGP13631 454 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 CMA1P23946 247 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 WASP42768 502 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 MCCD1P59942 119 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-221ENST00000550914 SLC14A1Q13336 389 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 C10orf120Q5SQS8 335 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 KIAA1211LQ6NV74 962 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 TPGS1Q6ZTW0 290 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 METTL3Q86U44 580 aaKnown RBP13.53□□□□□ -0.24
PTCH1-221ENST00000550914 TTC39CQ8N584 583 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 FOXJ1Q92949 421 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 ZNF419Q96HQ0 510 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-221ENST00000550914 TWNKQ96RR1 684 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 ACOX2Q99424 681 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 DUSP16Q9BY84 665 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 NIF3L1Q9GZT8 377 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 FAM124BQ9H5Z6 455 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-221ENST00000550914 NMUR1Q9HB89 426 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 SUSD2Q9UGT4 822 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 NFE2L3Q9Y4A8 694 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 USP3Q9Y6I4 520 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 ATXN2Q99700 1313 aaKnown RBP13.53□□□□□ -0.24
PTCH1-221ENST00000550914 ACACAQ13085 2346 aa13.53□□□□□ -0.24
PTCH1-221ENST00000550914 LAMA5O15230 3695 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 STC2O76061 302 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 PENKP01210 267 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-221ENST00000550914 RALAP11233 206 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 PFKFB1P16118 471 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 SPINK2P20155 84 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 NR2F2P24468 414 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 RDXP35241 583 aaKnown RBP13.52□□□□□ -0.25
PTCH1-221ENST00000550914 CHKAP35790 457 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 COG7P83436 770 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 DNM1Q05193 864 aaKnown RBP13.52□□□□□ -0.25
PTCH1-221ENST00000550914 SYCP2LQ5T4T6 812 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 TOGARAM2Q6ZUX3 1019 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 SLC41A1Q8IVJ1 513 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 HSCBQ8IWL3 235 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 CCDC150Q8NCX0 1101 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 MRGPRX1Q96LB2 322 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 HSPA12BQ96MM6 686 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 GTPBP2Q9BX10 602 aaKnown RBP13.52□□□□□ -0.25
PTCH1-221ENST00000550914 DCLK3Q9C098 648 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 APOBEC3GQ9HC16 384 aaKnown RBP13.52□□□□□ -0.25
PTCH1-221ENST00000550914 DNAAF2Q9NVR5 837 aaKnown RBP13.52□□□□□ -0.25
PTCH1-221ENST00000550914 NAGPAQ9UK23 515 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 CYP8B1Q9UNU6 501 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 HPSEQ9Y251 543 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 MSRB2Q9Y3D2 182 aa13.52□□□□□ -0.25
PTCH1-221ENST00000550914 FASNP49327 2511 aaKnown RBP13.52□□□□□ -0.25
PTCH1-221ENST00000550914 FAM221BA6H8Z2 402 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 NDUFS2O75306 463 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 RHOBTB3O94955 611 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 TOP3BO95985 862 aaKnown RBP13.51□□□□□ -0.25
PTCH1-221ENST00000550914 KRT13P13646 458 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 RPL13P26373 211 aaKnown RBP13.51□□□□□ -0.25
PTCH1-221ENST00000550914 GTF2H1P32780 548 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 SIM1P81133 766 aaPredicted RBP13.51□□□□□ -0.25
PTCH1-221ENST00000550914 ENPP2Q13822 863 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 STARD3Q14849 445 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 WDR45BQ5MNZ6 344 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 SCD5Q86SK9 330 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 MINDY1Q8N5J2 469 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 TRIML1Q8N9V2 468 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 TAS1R2Q8TE23 839 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 CCDC47Q96A33 483 aaKnown RBP13.51□□□□□ -0.25
PTCH1-221ENST00000550914 JAKMIP2Q96AA8 810 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 UBXN6Q9BZV1 441 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 ZDHHC5Q9C0B5 715 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 TMEM8AQ9HCN3 771 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 CACNA2D2Q9NY47 1150 aa13.51□□□□□ -0.25
PTCH1-221ENST00000550914 FAM237AA0A1B0GTK4 181 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 A0A1B0GVL5 298 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 MDM4O15151 490 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 GJB3O75712 270 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 KLKB1P03952 638 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 CD59P13987 128 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 GNSP15586 552 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 CD58P19256 250 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 PSMC2P35998 433 aaKnown RBP13.5□□□□□ -0.25
PTCH1-221ENST00000550914 GCLMP48507 274 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 PPP3CAQ08209 521 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 ZNF423Q2M1K9 1284 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 PPP1R26Q5T8A7 1209 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-221ENST00000550914 FYB2Q5VWT5 728 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 FAM186BQ8IYM0 893 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 ARHGAP18Q8N392 663 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 GUF1Q8N442 669 aaKnown RBP13.5□□□□□ -0.25
PTCH1-221ENST00000550914 DEFB119Q8N690 84 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 UCMAQ8WVF2 138 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 USP36Q9P275 1121 aaKnown RBP13.5□□□□□ -0.25
PTCH1-221ENST00000550914 THAP10Q9P2Z0 257 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-221ENST00000550914 NUDT5Q9UKK9 219 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 RAD54BQ9Y620 910 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 STON1Q9Y6Q2 735 aa13.5□□□□□ -0.25
PTCH1-221ENST00000550914 SPAARA0A1B0GVQ0 90 aa13.49□□□□□ -0.25
PTCH1-221ENST00000550914 HYAL3O43820 417 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-221ENST00000550914 TRIM49P0CI25 452 aa13.49□□□□□ -0.25
PTCH1-221ENST00000550914 TRIM49CP0CI26 452 aa13.49□□□□□ -0.25
PTCH1-221ENST00000550914 CD6P30203 668 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms