RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 CMA1P23946 247 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 WASP42768 502 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 MCCD1P59942 119 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-218ENST00000548945 SLC14A1Q13336 389 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 C10orf120Q5SQS8 335 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 KIAA1211LQ6NV74 962 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 TPGS1Q6ZTW0 290 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 METTL3Q86U44 580 aaKnown RBP13.53□□□□□ -0.24
PTCH1-218ENST00000548945 TTC39CQ8N584 583 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 FOXJ1Q92949 421 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 ZNF419Q96HQ0 510 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-218ENST00000548945 TWNKQ96RR1 684 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 ACOX2Q99424 681 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 DUSP16Q9BY84 665 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 NIF3L1Q9GZT8 377 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 FAM124BQ9H5Z6 455 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-218ENST00000548945 NMUR1Q9HB89 426 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 SUSD2Q9UGT4 822 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 NFE2L3Q9Y4A8 694 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 USP3Q9Y6I4 520 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 ATXN2Q99700 1313 aaKnown RBP13.53□□□□□ -0.24
PTCH1-218ENST00000548945 ACACAQ13085 2346 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 LAMA5O15230 3695 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 STC2O76061 302 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 PENKP01210 267 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-218ENST00000548945 RALAP11233 206 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 PFKFB1P16118 471 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 SPINK2P20155 84 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 NR2F2P24468 414 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 RDXP35241 583 aaKnown RBP13.52□□□□□ -0.25
PTCH1-218ENST00000548945 CHKAP35790 457 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 COG7P83436 770 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 DNM1Q05193 864 aaKnown RBP13.52□□□□□ -0.25
PTCH1-218ENST00000548945 SYCP2LQ5T4T6 812 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 TOGARAM2Q6ZUX3 1019 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 SLC41A1Q8IVJ1 513 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 HSCBQ8IWL3 235 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 CCDC150Q8NCX0 1101 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 MRGPRX1Q96LB2 322 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 HSPA12BQ96MM6 686 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 GTPBP2Q9BX10 602 aaKnown RBP13.52□□□□□ -0.25
PTCH1-218ENST00000548945 DCLK3Q9C098 648 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 APOBEC3GQ9HC16 384 aaKnown RBP13.52□□□□□ -0.25
PTCH1-218ENST00000548945 DNAAF2Q9NVR5 837 aaKnown RBP13.52□□□□□ -0.25
PTCH1-218ENST00000548945 NAGPAQ9UK23 515 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 CYP8B1Q9UNU6 501 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 HPSEQ9Y251 543 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 MSRB2Q9Y3D2 182 aa13.52□□□□□ -0.25
PTCH1-218ENST00000548945 FASNP49327 2511 aaKnown RBP13.52□□□□□ -0.25
PTCH1-218ENST00000548945 FAM221BA6H8Z2 402 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 NDUFS2O75306 463 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 RHOBTB3O94955 611 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 TOP3BO95985 862 aaKnown RBP13.51□□□□□ -0.25
PTCH1-218ENST00000548945 KRT13P13646 458 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 RPL13P26373 211 aaKnown RBP13.51□□□□□ -0.25
PTCH1-218ENST00000548945 GTF2H1P32780 548 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 SIM1P81133 766 aaPredicted RBP13.51□□□□□ -0.25
PTCH1-218ENST00000548945 ENPP2Q13822 863 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 STARD3Q14849 445 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 WDR45BQ5MNZ6 344 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 SCD5Q86SK9 330 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 MINDY1Q8N5J2 469 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 TRIML1Q8N9V2 468 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 TAS1R2Q8TE23 839 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 CCDC47Q96A33 483 aaKnown RBP13.51□□□□□ -0.25
PTCH1-218ENST00000548945 JAKMIP2Q96AA8 810 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 UBXN6Q9BZV1 441 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 ZDHHC5Q9C0B5 715 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 TMEM8AQ9HCN3 771 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 CACNA2D2Q9NY47 1150 aa13.51□□□□□ -0.25
PTCH1-218ENST00000548945 FAM237AA0A1B0GTK4 181 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 A0A1B0GVL5 298 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 MDM4O15151 490 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 GJB3O75712 270 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 KLKB1P03952 638 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 CD59P13987 128 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 GNSP15586 552 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 CD58P19256 250 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 PSMC2P35998 433 aaKnown RBP13.5□□□□□ -0.25
PTCH1-218ENST00000548945 GCLMP48507 274 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 PPP3CAQ08209 521 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 ZNF423Q2M1K9 1284 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 PPP1R26Q5T8A7 1209 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-218ENST00000548945 FYB2Q5VWT5 728 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 FAM186BQ8IYM0 893 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 ARHGAP18Q8N392 663 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 GUF1Q8N442 669 aaKnown RBP13.5□□□□□ -0.25
PTCH1-218ENST00000548945 DEFB119Q8N690 84 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 UCMAQ8WVF2 138 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 USP36Q9P275 1121 aaKnown RBP13.5□□□□□ -0.25
PTCH1-218ENST00000548945 THAP10Q9P2Z0 257 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-218ENST00000548945 NUDT5Q9UKK9 219 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 RAD54BQ9Y620 910 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 STON1Q9Y6Q2 735 aa13.5□□□□□ -0.25
PTCH1-218ENST00000548945 SPAARA0A1B0GVQ0 90 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 HYAL3O43820 417 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-218ENST00000548945 TRIM49P0CI25 452 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 TRIM49CP0CI26 452 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 CD6P30203 668 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 MFAP3P55082 362 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms