RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 DNASE2BQ8WZ79 361 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 CYFIP2Q96F07 1278 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 P2RY11Q96G91 374 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 NT5C1AQ9BXI3 368 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 CD93Q9NPY3 652 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 EXOC1Q9NV70 894 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 CACNA2D2Q9NY47 1150 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 CLIC5Q9NZA1 410 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 USP36Q9P275 1121 aaKnown RBP14.29□□□□□ -0.12
SS18-204ENST00000539244 SERTAD1Q9UHV2 236 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 TRAF3IP3Q9Y228 551 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 ZNF510Q9Y2H8 683 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 RAD54BQ9Y620 910 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 USP3Q9Y6I4 520 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.28□□□□□ -0.12
SS18-204ENST00000539244 WASH3PC4AMC7 463 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 MDM4O15151 490 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 NDUFS2O75306 463 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 CILPO75339 1184 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 F13A1P00488 732 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 CAPNS1P04632 268 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 MYL1P05976 194 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 GNSP15586 552 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 CD6P30203 668 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 PIK3CAP42336 1068 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 ATRXP46100 2492 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 ENPEPQ07075 957 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 CKAP5Q14008 2032 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 NFIL3Q16649 462 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 WDR45BQ5MNZ6 344 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 C10orf120Q5SQS8 335 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 FYB2Q5VWT5 728 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 SCD5Q86SK9 330 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 OR2I1PQ8NGU4 316 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 PAGE5Q96GU1 130 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 CDK5RAP1Q96SZ6 601 aaKnown RBP14.28□□□□□ -0.12
SS18-204ENST00000539244 IMPG2Q9BZV3 1241 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 ZDHHC5Q9C0B5 715 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 SLC6A17Q9H1V8 727 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 APOBEC3GQ9HC16 384 aaKnown RBP14.28□□□□□ -0.12
SS18-204ENST00000539244 WSB2Q9NYS7 404 aaPredicted RBP14.28□□□□□ -0.12
SS18-204ENST00000539244 THAP10Q9P2Z0 257 aaPredicted RBP14.28□□□□□ -0.12
SS18-204ENST00000539244 FRMD4BQ9Y2L6 1034 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 STON1Q9Y6Q2 735 aa14.28□□□□□ -0.12
SS18-204ENST00000539244 KLKB1P03952 638 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 ZSCAN22P10073 491 aaPredicted RBP14.27□□□□□ -0.13
SS18-204ENST00000539244 RALAP11233 206 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 CHKAP35790 457 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 VAMP7P51809 220 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 MFAP3P55082 362 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 MCCD1P59942 119 aaPredicted RBP14.27□□□□□ -0.13
SS18-204ENST00000539244 COG7P83436 770 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 STARD3Q14849 445 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 PLEKHG6Q3KR16 790 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 FUT11Q495W5 492 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 CEP135Q66GS9 1140 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 RGL4Q8IZJ4 473 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 CHCHD4Q8N4Q1 142 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 CADM4Q8NFZ8 388 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 SNX21Q969T3 373 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 DUSP16Q9BY84 665 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 NIF3L1Q9GZT8 377 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 MKRN2Q9H000 416 aaKnown RBP14.27□□□□□ -0.13
SS18-204ENST00000539244 ITM2CQ9NQX7 267 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 PLK2Q9NYY3 685 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 NAGPAQ9UK23 515 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 NUDT5Q9UKK9 219 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 RCOR1Q9UKL0 485 aa14.27□□□□□ -0.13
SS18-204ENST00000539244 CALUO43852 315 aaPredicted RBP14.26□□□□□ -0.13
SS18-204ENST00000539244 SH3BP5O60239 455 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 IGLV3-19P01714 112 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 GRIK2Q13002 908 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 E2F5Q15329 346 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 TRIP6Q15654 476 aaKnown RBP14.26□□□□□ -0.13
SS18-204ENST00000539244 GEN1Q17RS7 908 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 KIAA1324Q6UXG2 1013 aaKnown RBP14.26□□□□□ -0.13
SS18-204ENST00000539244 INTS8Q75QN2 995 aaKnown RBP14.26□□□□□ -0.13
SS18-204ENST00000539244 RBBP8NLQ8NC74 664 aaPredicted RBP14.26□□□□□ -0.13
SS18-204ENST00000539244 TAS1R2Q8TE23 839 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 ADAMTS14Q8WXS8 1223 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 BHMTQ93088 406 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 JAKMIP2Q96AA8 810 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 FAXDC2Q96IV6 333 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 PIWIL1Q96J94 861 aaKnown RBP14.26□□□□□ -0.13
SS18-204ENST00000539244 DCLK3Q9C098 648 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 PRDM16Q9HAZ2 1276 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 USP25Q9UHP3 1055 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 CFAP45Q9UL16 551 aa14.26□□□□□ -0.13
SS18-204ENST00000539244 BAHCC1Q9P281 2608 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 A0A1B0GTW7 788 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 TAF4O00268 1085 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 CBFA2T3O75081 653 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 ZNF883P0CG24 379 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 C7P10643 843 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 MAOBP27338 520 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 IL12RB1P42701 662 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 RING1Q06587 406 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 PPP3CAQ08209 521 aa14.25□□□□□ -0.13
SS18-204ENST00000539244 EIF4HQ15056 248 aaKnown RBP14.25□□□□□ -0.13
SS18-204ENST00000539244 FOXD4L6Q3SYB3 417 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms