RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CDH9Q9ULB4 789 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 KIAA1024Q9UPX6 916 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 PCDHGA8Q9Y5G5 932 aa9.72□□□□□ -0.85
USP28-205ENST00000537706 TEP1Q99973 2627 aaKnown RBP9.72□□□□□ -0.85
USP28-205ENST00000537706 CELSR3Q9NYQ7 3312 aa9.71□□□□□ -0.85
USP28-205ENST00000537706 COCHO43405 550 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 RPS6KB1P23443 525 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 YWHAQP27348 245 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 SKOR1P84550 965 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 IFRD2Q12894 506 aaPredicted RBP9.71□□□□□ -0.86
USP28-205ENST00000537706 ZNF211Q13398 564 aaPredicted RBP9.71□□□□□ -0.86
USP28-205ENST00000537706 ENPP2Q13822 863 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 EIF4HQ15056 248 aaKnown RBP9.71□□□□□ -0.86
USP28-205ENST00000537706 SHBQ15464 509 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 IGFBP7Q16270 282 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 SFMBT2Q5VUG0 894 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 HIST2H2BCQ6DN03 193 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 TOP6BLQ8N6T0 577 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 GOLGA1Q92805 767 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 SYT15Q9BQS2 421 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 AGXT2Q9BYV1 514 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 SEPT10Q9P0V9 454 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 CPSF3Q9UKF6 684 aaKnown RBP9.71□□□□□ -0.86
USP28-205ENST00000537706 L1RE1Q9UN81 338 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 AHCTF1Q8WYP5 2266 aa9.71□□□□□ -0.86
USP28-205ENST00000537706 LRRC72A6NJI9 287 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 TULP1O00294 542 aaPredicted RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 TIMM44O43615 452 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 CISD3P0C7P0 127 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 ALPPL2P10696 532 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 CDC25AP30304 524 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 CASRP41180 1078 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 TUBP50607 506 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 EVCP57679 992 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 BNIP3Q12983 259 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 SKIDA1Q1XH10 827 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 EARS2Q5JPH6 523 aaKnown RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 FAM171BQ6P995 826 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 FOXR1Q6PIV2 292 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 HTR3DQ70Z44 454 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 ANKS1BQ7Z6G8 1248 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 DAW1Q8N136 415 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 IPO9Q96P70 1041 aaKnown RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 USP29Q9HBJ7 922 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 DDX19AQ9NUU7 478 aaKnown RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 LRWD1Q9UFC0 647 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 SLC27A6Q9Y2P4 619 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 SPTAN1Q13813 2472 aaKnown RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 CREBBPQ92793 2442 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 TLR4O00206 839 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 AGFG2O95081 481 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 IL18RAPO95256 599 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 GP1BAP07359 652 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 ACO1P21399 889 aaKnown RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 TNFRSF8P28908 595 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 POU5F1Q01860 360 aaKnown RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 ZNF234Q14588 700 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 CACTINQ8WUQ7 758 aaKnown RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 GTF3C6Q969F1 213 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 MOCOSQ96EN8 888 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 ANP32EQ9BTT0 268 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 CIPCQ9C0C6 399 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 HAPLN2Q9GZV7 340 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 GZF1Q9H116 711 aaPredicted RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 LARSQ9P2J5 1176 aaKnown RBP9.7□□□□□ -0.86
USP28-205ENST00000537706 AGAP1Q9UPQ3 857 aa9.7□□□□□ -0.86
USP28-205ENST00000537706 TEX15Q9BXT5 2789 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 FAM47DPA6NHR8 397 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 SFI1A8K8P3 1242 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 EFSO43281 561 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 SIGLEC6O43699 453 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 ABCD1P33897 745 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 MCM7P33993 719 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 NXPH1P58417 271 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 NR5A1Q13285 461 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 TBR1Q16650 682 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 ISXQ2M1V0 245 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 KRTAP21-3Q3LHN1 58 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 CLEC14AQ86T13 490 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 PTRH1Q86Y79 214 aaKnown RBP9.69□□□□□ -0.86
USP28-205ENST00000537706 WDR36Q8NI36 951 aaKnown RBP9.69□□□□□ -0.86
USP28-205ENST00000537706 MAPK15Q8TD08 544 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 ZNF274Q96GC6 653 aaPredicted RBP9.69□□□□□ -0.86
USP28-205ENST00000537706 RAB34Q9BZG1 259 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 ELOVL2Q9NXB9 296 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 SCML1Q9UN30 329 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 SNX9Q9Y5X1 595 aa9.69□□□□□ -0.86
USP28-205ENST00000537706 CDRT15L2A8MXV6 281 aa9.68□□□□□ -0.86
USP28-205ENST00000537706 F8VP50 259 aa9.68□□□□□ -0.86
USP28-205ENST00000537706 THEGLP0DJG4 465 aa9.68□□□□□ -0.86
USP28-205ENST00000537706 POU3F2P20265 443 aaPredicted RBP9.68□□□□□ -0.86
USP28-205ENST00000537706 GUCY2CP25092 1073 aa9.68□□□□□ -0.86
USP28-205ENST00000537706 POLR2BP30876 1174 aaKnown RBP9.68□□□□□ -0.86
USP28-205ENST00000537706 MORC3Q14149 939 aa9.68□□□□□ -0.86
USP28-205ENST00000537706 ZNF776Q68DI1 518 aaPredicted RBP9.68□□□□□ -0.86
USP28-205ENST00000537706 SLFN12LQ6IEE8 588 aa9.68□□□□□ -0.86
USP28-205ENST00000537706 RINT1Q6NUQ1 792 aa9.68□□□□□ -0.86
USP28-205ENST00000537706 NUP93Q8N1F7 819 aa9.68□□□□□ -0.86
USP28-205ENST00000537706 LRRC52Q8N7C0 313 aa9.68□□□□□ -0.86
USP28-205ENST00000537706 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms