RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	TISP43	B9A030	160 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710		J3KRW8	73 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710		M0QYT0	321 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	TMPRSS11D	O60235	418 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	URI1	O94763	535 aa	Predicted RBP	6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	EBLN1	P0CF75	366 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	CTGF	P29279	349 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	CYP2C18	P33260	490 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	MCM5	P33992	734 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	TXNL4A	P83876	142 aa	Known RBP	6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	UBE3A	Q05086	875 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	DEUP1	Q05D60	604 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	DDX10	Q13206	875 aa	Known RBP	6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	EFR3A	Q14156	821 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	KCNJ12	Q14500	433 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	SMAD1	Q15797	465 aa	Known RBP	6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	NBPF8	Q3BBV2	869 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	LSM12	Q3MHD2	195 aa	Known RBP	6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	L1TD1	Q5T7N2	865 aa	Known RBP	6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	INTS11	Q5TA45	600 aa	Known RBP	6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	FAM90A2P	Q658T7	463 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	DGAT2L7P	Q6IED9	249 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	PTCHD4	Q6ZW05	846 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710		Q6ZWC4	215 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	RHOU	Q7L0Q8	258 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	ZNF551	Q7Z340	670 aa	Predicted RBP	6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	MAATS1	Q7Z4T9	603 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	HEATR4	Q86WZ0	1026 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	TMTC1	Q8IUR5	882 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	CAVIN3	Q969G5	261 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	FAR2	Q96K12	515 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	PAAF1	Q9BRP4	392 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	C1QTNF3	Q9BXJ4	246 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	TWSG1	Q9GZX9	223 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	ZHX3	Q9H4I2	956 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	CYP4F11	Q9HBI6	524 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	USP29	Q9HBJ7	922 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	SNX15	Q9NRS6	342 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	AMFR	Q9UKV5	643 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	RAB21	Q9UL25	225 aa		6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	TRPC5	Q9UL62	973 aa	Predicted RBP	6.1	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3D	A0A087WVF3	549 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3I	A0A087WXS9	549 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3E	A0A087X179	549 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3K	A0A087X1G2	549 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	WDR27	A2RRH5	827 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3B	A6NDS4	549 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3F	A6NER0	549 aa	Predicted RBP	6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3L	B9A6J9	549 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	PRRT4	C9JH25	899 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	QSOX1	O00391	747 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TTLL1	O95922	423 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3H	P0C7X1	549 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	PEPD	P12955	493 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	MMP8	P22894	467 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	DDIT3	P35638	169 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	BLOC1S1	P78537	153 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	FOXE3	Q13461	319 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	AAK1	Q2M2I8	961 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D25	Q3MII6	688 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBRG1	Q3YBR2	411 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	DENND2C	Q68D51	928 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3G	Q6DHY5	549 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3C	Q6IPX1	549 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	TBC1D3	Q8IZP1	549 aa	Predicted RBP	6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	PPHLN1	Q8NEY8	458 aa	Known RBP	6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	ABHD11	Q8NFV4	315 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	RP9	Q8TA86	221 aa	Known RBP	6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	HERVK_113	Q902F9	699 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	CTHRC1	Q96CG8	243 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	SLC26A6	Q9BXS9	759 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	SAP30L	Q9HAJ7	183 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	WASH6P	Q9NQA3	447 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	LRIT1	Q9P2V4	623 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	SLC13A4	Q9UKG4	626 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	GABRQ	Q9UN88	632 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	ZBTB1	Q9Y2K1	713 aa		6.09	□□□□□ -1.43
PRKDC-208	ENST00000536710	CCDC187	A0A096LP49	1063 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	LOC105369274	A0A096LPK9	316 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	LOC102723532	A0A0G2JNH3	316 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	GXYLT2	A0PJZ3	443 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	STX16-NPEPL1	H3BU86	382 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710		M0QZQ0	153 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	STX16	O14662	325 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	HOXC11	O43248	304 aa	Predicted RBP	6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	TFRC	P02786	760 aa	Known RBP	6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	NPS	P0C0P6	89 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	HKR1	P10072	659 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	TNFAIP3	P21580	790 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	GRK5	P34947	590 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	IGHMBP2	P38935	993 aa	Known RBP	6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	MCM2	P49736	904 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	MRPS35	P82673	323 aa	Known RBP	6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	TLE2	Q04725	743 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	CCDC15	Q0P6D6	951 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	ANKRD1	Q15327	319 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	SPATS1	Q496A3	300 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	FBLN7	Q53RD9	439 aa		6.08	□□□□□ -1.44
PRKDC-208	ENST00000536710	WDR78	Q5VTH9	848 aa		6.08	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 29 ms