RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SYNPOQ8N3V7 929 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 PDCL3Q9H2J4 239 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 LMAN1LQ9HAT1 526 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 SPHK2Q9NRA0 654 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 ASNSD1Q9NWL6 643 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 MARK1Q9P0L2 795 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 TJP2Q9UDY2 1190 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 SFMBT1Q9UHJ3 866 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 MYO6Q9UM54 1294 aa15.71■□□□□ 0.11
CPSF1-208ENST00000532560 KIAA1549LQ6ZVL6 1849 aa15.71■□□□□ 0.1
CPSF1-208ENST00000532560 IGLV3-27P01718 113 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 ERBB2P04626 1255 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 GLI1P08151 1106 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 HMBSP08397 361 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 MMEP08473 750 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 NCAM1P13591 858 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 DRD1P21728 446 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 GALK1P51570 392 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 FANCCQ00597 558 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 GAD2Q05329 585 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 NR1I3Q14994 352 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 ANGPT1Q15389 498 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 HS1BP3Q53T59 392 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 NAIF1Q69YI7 327 aaPredicted RBP15.7■□□□□ 0.1
CPSF1-208ENST00000532560 LRSAM1Q6UWE0 723 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 OLFML1Q6UWY5 402 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 MAMSTRQ6ZN01 415 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 TOGARAM2Q6ZUX3 1019 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 FAM183BPQ6ZVS7 135 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 CACNA2D4Q7Z3S7 1137 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 GAS2L3Q86XJ1 694 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 ZDHHC17Q8IUH5 632 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 C1orf210Q8IVY1 113 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 DQX1Q8TE96 717 aaKnown RBP15.7■□□□□ 0.1
CPSF1-208ENST00000532560 SLC20A1Q8WUM9 679 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 TRIM44Q96DX7 344 aaPredicted RBP15.7■□□□□ 0.1
CPSF1-208ENST00000532560 PIWIL1Q96J94 861 aaKnown RBP15.7■□□□□ 0.1
CPSF1-208ENST00000532560 IRF2BPLQ9H1B7 796 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 TSPY26PQ9H489 355 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 POPDC2Q9HBU9 364 aa15.7■□□□□ 0.1
CPSF1-208ENST00000532560 RBM12Q9NTZ6 932 aaKnown RBP15.7■□□□□ 0.1
CPSF1-208ENST00000532560 MSI1O43347 362 aaKnown RBP15.69■□□□□ 0.1
CPSF1-208ENST00000532560 HSF2BPO75031 334 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 LATS1O95835 1130 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 HARS2P49590 506 aaKnown RBP15.69■□□□□ 0.1
CPSF1-208ENST00000532560 YWHAZP63104 245 aaKnown RBP15.69■□□□□ 0.1
CPSF1-208ENST00000532560 NOMO3P69849 1222 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 FMO1Q01740 532 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 MTAPQ13126 283 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 FBXO43Q4G163 708 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 EFHC1Q5JVL4 640 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 TRIM72Q6ZMU5 477 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 SLC26A9Q7LBE3 791 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 C12orf40Q86WS4 652 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 ETFBKMTQ8IXQ9 262 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 FAM217AQ8IXS0 508 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 MSANTD4Q8NCY6 345 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 BAP1Q92560 729 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 SERPINB11Q96P15 392 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 SYNCQ9H7C4 482 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 PRMT8Q9NR22 394 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-208ENST00000532560 SPATA6Q9NWH7 488 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-208ENST00000532560 AGO1Q9UL18 857 aaKnown RBP15.69■□□□□ 0.1
CPSF1-208ENST00000532560 NAALADL1Q9UQQ1 740 aa15.69■□□□□ 0.1
CPSF1-208ENST00000532560 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-208ENST00000532560 CAPN9O14815 690 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 EGFP01133 1207 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 CYP1A1P04798 512 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-208ENST00000532560 CHRNB2P17787 502 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 CHKAP35790 457 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 SCNN1AP37088 669 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 GABRB2P47870 512 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 UBASH3AP57075 661 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 RING1Q06587 406 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 GAS6Q14393 721 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 ANO4Q32M45 955 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 NUGGCQ68CJ6 796 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 OR6B2Q6IFH4 312 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 TMEM25Q86YD3 366 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 DENND1CQ8IV53 801 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 PHTF2Q8N3S3 785 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 CPXM2Q8N436 756 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 SPEM1Q8N4L4 309 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 ZNF397Q8NF99 534 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-208ENST00000532560 SLC2A13Q96QE2 648 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 TTYH3Q9C0H2 523 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 FBRSL1Q9HCM7 1045 aaKnown RBP15.68■□□□□ 0.1
CPSF1-208ENST00000532560 WDR35Q9P2L0 1181 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 STOML2Q9UJZ1 356 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 CACNA1HO95180 2353 aa15.68■□□□□ 0.1
CPSF1-208ENST00000532560 MYOFQ9NZM1 2061 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 LAMTOR5O43504 91 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 CACNG3O60359 315 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 DAB1O75553 588 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 IGLV3-25P01717 112 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 CCDC172P0C7W6 258 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 FERP16591 822 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 PLA2G5P39877 138 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 PBX1P40424 430 aa15.67■□□□□ 0.1
CPSF1-208ENST00000532560 TBX4P57082 545 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms