RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 LMAN1P49257 510 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 SERPINB8P50452 374 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 RAB1AP62820 205 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 DR1Q01658 176 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 GUCY1B3Q02153 619 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 ZNF844Q08AG5 666 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 KIF5AQ12840 1032 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 RIPK1Q13546 671 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 GFOD2Q3B7J2 385 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 CFAP157Q5JU67 520 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 CCDC183Q5T5S1 534 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 C3orf62Q6ZUJ4 267 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 ZNF804AQ7Z570 1209 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 SLC7A5P1Q8MH63 180 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 NSUN7Q8NE18 718 aaKnown RBP6.01□□□□□ -1.45
CD44-231ENST00000531110 GDAP1Q8TB36 358 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 PROKR1Q8TCW9 393 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 ATP6V0A1Q93050 837 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 GTF3C6Q969F1 213 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 OPTNQ96CV9 577 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 MARS2Q96GW9 593 aaKnown RBP6.01□□□□□ -1.45
CD44-231ENST00000531110 NEUROD6Q96NK8 337 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 TRAPPC9Q96Q05 1148 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 SPAG5Q96R06 1193 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 TSC22D3Q99576 134 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 ADAM2Q99965 735 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 XPO4Q9C0E2 1151 aaKnown RBP6.01□□□□□ -1.45
CD44-231ENST00000531110 VIPAS39Q9H9C1 493 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 PARVBQ9HBI1 364 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 DMAP1Q9NPF5 467 aaPredicted RBP6.01□□□□□ -1.45
CD44-231ENST00000531110 PDRG1Q9NUG6 133 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 SH3GLB1Q9Y371 365 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 REXO2Q9Y3B8 237 aaKnown RBP6.01□□□□□ -1.45
CD44-231ENST00000531110 NOX1Q9Y5S8 564 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 ANKRD30BQ9BXX2 1392 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 RAB3GAP2Q9H2M9 1393 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 ATP10AO60312 1499 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 CAMSAP2Q08AD1 1489 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 PLB1Q6P1J6 1458 aa6.01□□□□□ -1.45
CD44-231ENST00000531110 CENPVL1A0A0U1RR11 272 aa6□□□□□ -1.45
CD44-231ENST00000531110 GOLGA6L7A0A1B0GV03 622 aa6□□□□□ -1.45
CD44-231ENST00000531110 TMEM247A6NEH6 219 aa6□□□□□ -1.45
CD44-231ENST00000531110 PRSS29PA6NIE9 313 aa6□□□□□ -1.45
CD44-231ENST00000531110 H3BUI4 141 aa6□□□□□ -1.45
CD44-231ENST00000531110 NDUFAB1O14561 156 aa6□□□□□ -1.45
CD44-231ENST00000531110 PRPF3O43395 683 aaKnown RBP6□□□□□ -1.45
CD44-231ENST00000531110 SOAT2O75908 522 aa6□□□□□ -1.45
CD44-231ENST00000531110 HRGP04196 525 aa6□□□□□ -1.45
CD44-231ENST00000531110 HSPA8P11142 646 aaKnown RBP6□□□□□ -1.45
CD44-231ENST00000531110 SFTPCP11686 197 aa6□□□□□ -1.45
CD44-231ENST00000531110 KIF5BP33176 963 aa6□□□□□ -1.45
CD44-231ENST00000531110 CCNG1P51959 295 aa6□□□□□ -1.45
CD44-231ENST00000531110 PDE1BQ01064 536 aa6□□□□□ -1.45
CD44-231ENST00000531110 BLMHQ13867 455 aa6□□□□□ -1.45
CD44-231ENST00000531110 RAPGEF1Q13905 1077 aa6□□□□□ -1.45
CD44-231ENST00000531110 FGL2Q14314 439 aa6□□□□□ -1.45
CD44-231ENST00000531110 GBX1Q14549 363 aa6□□□□□ -1.45
CD44-231ENST00000531110 PTPAQ15257 358 aa6□□□□□ -1.45
CD44-231ENST00000531110 NDUFA5Q16718 116 aa6□□□□□ -1.45
CD44-231ENST00000531110 CCDC157Q569K6 752 aa6□□□□□ -1.45
CD44-231ENST00000531110 FAM133BQ5BKY9 247 aaKnown RBP6□□□□□ -1.45
CD44-231ENST00000531110 ABHD17BQ5VST6 288 aa6□□□□□ -1.45
CD44-231ENST00000531110 SP5Q6BEB4 398 aaPredicted RBP6□□□□□ -1.45
CD44-231ENST00000531110 SRGAP1Q7Z6B7 1085 aa6□□□□□ -1.45
CD44-231ENST00000531110 RAB11FIP4Q86YS3 637 aa6□□□□□ -1.45
CD44-231ENST00000531110 CCDC13Q8IYE1 715 aa6□□□□□ -1.45
CD44-231ENST00000531110 COLGALT2Q8IYK4 626 aa6□□□□□ -1.45
CD44-231ENST00000531110 ARHGAP18Q8N392 663 aa6□□□□□ -1.45
CD44-231ENST00000531110 CCDC89Q8N998 374 aa6□□□□□ -1.45
CD44-231ENST00000531110 Q8NA96 180 aa6□□□□□ -1.45
CD44-231ENST00000531110 TMIEQ8NEW7 156 aa6□□□□□ -1.45
CD44-231ENST00000531110 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6□□□□□ -1.45
CD44-231ENST00000531110 HVCN1Q96D96 273 aa6□□□□□ -1.45
CD44-231ENST00000531110 LRGUKQ96M69 825 aa6□□□□□ -1.45
CD44-231ENST00000531110 GDAP1L1Q96MZ0 367 aa6□□□□□ -1.45
CD44-231ENST00000531110 LRFN3Q9BTN0 628 aa6□□□□□ -1.45
CD44-231ENST00000531110 SPZ1Q9BXG8 430 aa6□□□□□ -1.45
CD44-231ENST00000531110 VPS33BQ9H267 617 aa6□□□□□ -1.45
CD44-231ENST00000531110 VCX3AQ9NNX9 186 aa6□□□□□ -1.45
CD44-231ENST00000531110 ARFGAP3Q9NP61 516 aa6□□□□□ -1.45
CD44-231ENST00000531110 SARS2Q9NP81 518 aaKnown RBP6□□□□□ -1.45
CD44-231ENST00000531110 PRDM11Q9NQV5 511 aa6□□□□□ -1.45
CD44-231ENST00000531110 KLC4Q9NSK0 619 aa6□□□□□ -1.45
CD44-231ENST00000531110 ZBTB40Q9NUA8 1239 aa6□□□□□ -1.45
CD44-231ENST00000531110 UBAP1Q9NZ09 502 aa6□□□□□ -1.45
CD44-231ENST00000531110 AIPL1Q9NZN9 384 aa6□□□□□ -1.45
CD44-231ENST00000531110 HSFX1Q9UBD0 423 aa6□□□□□ -1.45
CD44-231ENST00000531110 ZNF215Q9UL58 517 aaPredicted RBP6□□□□□ -1.45
CD44-231ENST00000531110 CCPG1Q9ULG6 757 aa6□□□□□ -1.45
CD44-231ENST00000531110 NOB1Q9ULX3 412 aaKnown RBP6□□□□□ -1.45
CD44-231ENST00000531110 BZW2Q9Y6E2 419 aaKnown RBP6□□□□□ -1.45
CD44-231ENST00000531110 ABCC11Q96J66 1382 aa6□□□□□ -1.45
CD44-231ENST00000531110 TCOF1Q13428 1488 aaKnown RBP6□□□□□ -1.45
CD44-231ENST00000531110 FAM135AQ9P2D6 1515 aa5.99□□□□□ -1.45
CD44-231ENST00000531110 CCDC18Q5T9S5 1454 aa5.99□□□□□ -1.45
CD44-231ENST00000531110 GPR75-ASB3A0A0A6YYF3 556 aa5.99□□□□□ -1.45
CD44-231ENST00000531110 PIPSLA2A3N6 862 aa5.99□□□□□ -1.45
CD44-231ENST00000531110 C2orf81A6NN90 581 aa5.99□□□□□ -1.45
CD44-231ENST00000531110 FOXN3O00409 490 aaPredicted RBP5.99□□□□□ -1.45
CD44-231ENST00000531110 ZSCAN12O43309 604 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms