RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SERPINF2P08697 491 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 RALAP11233 206 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 MAPK8P45983 427 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 ZNF33AQ06730 810 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 DUOXA1Q1HG43 343 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 EDRF1Q3B7T1 1238 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 ZNF394Q53GI3 561 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 RABEPKQ7Z6M1 372 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 TTC39CQ8N584 583 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 SEMA4DQ92854 862 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 MRGPRX1Q96LB2 322 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 UBXN6Q9BZV1 441 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 GOLPH3LQ9H4A5 285 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 FAM124BQ9H5Z6 455 aaPredicted RBP11.93□□□□□ -0.5
VPS28-214ENST00000531032 MMRN2Q9H8L6 949 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 CAPN10Q9HC96 672 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 PLK2Q9NYY3 685 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 SLC6A14Q9UN76 642 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 ZNF510Q9Y2H8 683 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 SLC27A6Q9Y2P4 619 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 ASPMQ8IZT6 3477 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 CHD6Q8TD26 2715 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 CFIP05156 583 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 CHKAP35790 457 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 MXI1P50539 228 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 RAD23BP54727 409 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 COG7P83436 770 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 GFPT1Q06210 699 aaPredicted RBP11.92□□□□□ -0.5
VPS28-214ENST00000531032 FOXC1Q12948 553 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 SEMA3BQ13214 749 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 BECN1Q14457 450 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 RAB41Q5JT25 222 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 FYB2Q5VWT5 728 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 ARHGAP17Q68EM7 881 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 UNQ6494/PRO21346Q6UXR6 183 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 PIP4P1Q86T03 277 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 SLC41A1Q8IVJ1 513 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 DEFB119Q8N690 84 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 SLC4A11Q8NBS3 891 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 FBXL13Q8NEE6 735 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 DEFB124Q8NES8 71 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 BHMTQ93088 406 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 TMEM176AQ96HP8 235 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 HEXIM2Q96MH2 286 aaKnown RBP11.92□□□□□ -0.5
VPS28-214ENST00000531032 TMEM121BQ9BXQ6 578 aaPredicted RBP11.92□□□□□ -0.5
VPS28-214ENST00000531032 SCAND2PQ9GZW5 306 aaPredicted RBP11.92□□□□□ -0.5
VPS28-214ENST00000531032 CISHQ9NSE2 258 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 RAB20Q9NX57 234 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 CACNA2D2Q9NY47 1150 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 CYP8B1Q9UNU6 501 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 RAD54BQ9Y620 910 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 ADAMTS9Q9P2N4 1935 aa11.92□□□□□ -0.5
VPS28-214ENST00000531032 C1QTNF9BB2RNN3 333 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 WASH3PC4AMC7 463 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 NPC1O15118 1278 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 STX10O60499 249 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 ZNF202O95125 648 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 C1QTNF9P0C862 333 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 CORO1AP31146 461 aaKnown RBP11.91□□□□□ -0.5
VPS28-214ENST00000531032 MFAP3P55082 362 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 EFEMP1Q12805 493 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 ENPP2Q13822 863 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 PIGZQ86VD9 579 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 FAM217AQ8IXS0 508 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 ARHGAP18Q8N392 663 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 TRIML1Q8N9V2 468 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 ERLEC1Q96DZ1 483 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 ZNF419Q96HQ0 510 aaPredicted RBP11.91□□□□□ -0.5
VPS28-214ENST00000531032 HSPA12BQ96MM6 686 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 ARID3AQ99856 593 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 ADAM33Q9BZ11 813 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 DCLK3Q9C098 648 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 SLC6A17Q9H1V8 727 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 SLC32A1Q9H598 525 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 CD93Q9NPY3 652 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 FSCN3Q9NQT6 498 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 RASAL2Q9UJF2 1139 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 AGO1Q9UL18 857 aaKnown RBP11.91□□□□□ -0.5
VPS28-214ENST00000531032 ATP6V1DQ9Y5K8 247 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 STON1Q9Y6Q2 735 aa11.91□□□□□ -0.5
VPS28-214ENST00000531032 PCNX2A6NKB5 2137 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 ARHGAP33O14559 1287 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 TOP3BO95985 862 aaKnown RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 EPB41P11171 864 aaKnown RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 SPINK2P20155 84 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 ZNF132P52740 706 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 ATXN3P54252 364 aaPredicted RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 CACNA1EQ15878 2313 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 GEN1Q17RS7 908 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 FUT11Q495W5 492 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 PM20D1Q6GTS8 502 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 BHLHA9Q7RTU4 235 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 METTL3Q86U44 580 aaKnown RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 SMYD4Q8IYR2 804 aaPredicted RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 CPXM2Q8N436 756 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 HDDC3Q8N4P3 179 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 KDF1Q8NAX2 398 aaPredicted RBP11.9□□□□□ -0.5
VPS28-214ENST00000531032 ANKRD52Q8NB46 1076 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 FOXJ1Q92949 421 aa11.9□□□□□ -0.5
VPS28-214ENST00000531032 EEF2KMTQ96G04 330 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms