RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CDY1Q9Y6F8 540 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 REV3LO60673 3130 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 EYSQ5T1H1 3165 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 FAM187AA6NFU0 413 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 PI4K2BG5E9Z4 385 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 RAD51CO43502 376 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 RTN3O95197 1032 aaPredicted RBP22.06■■□□□ 1.12
VPS28-212ENST00000530836 C1RP00736 705 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 OR1D2P34982 312 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 AIF1P55008 147 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 ARPP19P56211 112 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 ADAM15Q13444 863 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 KCNC3Q14003 757 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 CTC1Q2NKJ3 1217 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 ERMARDQ5T6L9 678 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 CYP4V2Q6ZWL3 525 aaPredicted RBP22.06■■□□□ 1.12
VPS28-212ENST00000530836 BHLHA9Q7RTU4 235 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 SLC22A17Q8WUG5 538 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 HNRNPLLQ8WVV9 542 aaKnown RBP22.06■■□□□ 1.12
VPS28-212ENST00000530836 NDRG1Q92597 394 aaKnown RBP22.06■■□□□ 1.12
VPS28-212ENST00000530836 HSPH1Q92598 858 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 PEBP4Q96S96 227 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 FRMD8P1Q9BZ68 369 aaPredicted RBP22.06■■□□□ 1.12
VPS28-212ENST00000530836 ABCC13Q9NSE7 274 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.06■■□□□ 1.12
VPS28-212ENST00000530836 KLHL11Q9NVR0 708 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 PATJQ8NI35 1801 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 NCAM1P13591 858 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 TNFRSF8P28908 595 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 CLCN4P51793 760 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 DR1Q01658 176 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 RAB33AQ14088 237 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 CCNG2Q16589 344 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 MAP9Q49MG5 647 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 BSPRYQ5W0U4 402 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 TTC13Q8NBP0 860 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 HEMGNQ9BXL5 484 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 AMACRQ9UHK6 382 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 RASAL2Q9UJF2 1139 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 SCML2Q9UQR0 700 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 HCFC2Q9Y5Z7 792 aa22.06■■□□□ 1.12
VPS28-212ENST00000530836 TCRBV7S2A1N4TA0A589 114 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 M0QYT0 321 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 HEXIM1O94992 359 aaKnown RBP22.05■■□□□ 1.12
VPS28-212ENST00000530836 FYNP06241 537 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 HAPLN1P10915 354 aaPredicted RBP22.05■■□□□ 1.12
VPS28-212ENST00000530836 COILP38432 576 aaPredicted RBP22.05■■□□□ 1.12
VPS28-212ENST00000530836 TUFMP49411 452 aaKnown RBP22.05■■□□□ 1.12
VPS28-212ENST00000530836 TPGS2Q68CL5 300 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 LILRA6Q6PI73 481 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 FBXO38Q6PIJ6 1188 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 CCDC137Q6PK04 289 aaKnown RBP22.05■■□□□ 1.12
VPS28-212ENST00000530836 TMEM184AQ6ZMB5 413 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 HFE2Q6ZVN8 426 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 ZDHHC14Q8IZN3 488 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 EIF1ADQ8N9N8 165 aaKnown RBP22.05■■□□□ 1.12
VPS28-212ENST00000530836 ATAD1Q8NBU5 361 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 VN1R2Q8NFZ6 395 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 FAM71BQ8TC56 605 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 GRK7Q8WTQ7 553 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 SLCO2A1Q92959 643 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 PABPC5Q96DU9 382 aaKnown RBP22.05■■□□□ 1.12
VPS28-212ENST00000530836 PGLYRP2Q96PD5 576 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 RAB17Q9H0T7 212 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 IL37Q9NZH6 218 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 DMGDHQ9UI17 866 aaKnown RBP22.05■■□□□ 1.12
VPS28-212ENST00000530836 NAALADL1Q9UQQ1 740 aa22.05■■□□□ 1.12
VPS28-212ENST00000530836 UTP11Q9Y3A2 253 aaKnown RBP22.05■■□□□ 1.12
VPS28-212ENST00000530836 LINC01565O15544 149 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 ARSEP51690 589 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 CDH6P55285 790 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 VSNL1P62760 191 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 DEUP1Q05D60 604 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 KRT81Q14533 505 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 SKIV2LQ15477 1246 aaKnown RBP22.04■■□□□ 1.12
VPS28-212ENST00000530836 SYPL2Q5VXT5 272 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 RNF19BQ6ZMZ0 732 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 MON1AQ86VX9 555 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 SCAMP5Q8TAC9 235 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 SNRNP25Q9BV90 132 aaKnown RBP22.04■■□□□ 1.12
VPS28-212ENST00000530836 MAK16Q9BXY0 300 aaKnown RBP22.04■■□□□ 1.12
VPS28-212ENST00000530836 MAFFQ9ULX9 164 aa22.04■■□□□ 1.12
VPS28-212ENST00000530836 TGM5O43548 720 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 GLUD1P00367 558 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 TFE3P19532 575 aaPredicted RBP22.03■■□□□ 1.12
VPS28-212ENST00000530836 GBP1P32455 592 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 YWHAGP61981 247 aaKnown RBP eCLIP22.03■■□□□ 1.12
VPS28-212ENST00000530836 RBM10P98175 930 aaKnown RBP22.03■■□□□ 1.12
VPS28-212ENST00000530836 SLC7A5Q01650 507 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 ROR1Q01973 937 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 LMNB2Q03252 620 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 TFDP2Q14188 446 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 DPYSL2Q16555 572 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 DDR2Q16832 855 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 KAZNQ674X7 775 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 DRICH1Q6PGQ1 229 aaPredicted RBP22.03■■□□□ 1.12
VPS28-212ENST00000530836 SYDE1Q6ZW31 735 aaPredicted RBP22.03■■□□□ 1.12
VPS28-212ENST00000530836 BBS12Q6ZW61 710 aa22.03■■□□□ 1.12
VPS28-212ENST00000530836 SND1Q7KZF4 910 aaKnown RBP eCLIP22.03■■□□□ 1.12
VPS28-212ENST00000530836 CCDC105Q8IYK2 499 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms