RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CLIC5Q9NZA1 410 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 AMACRQ9UHK6 382 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 FBXW11Q9UKB1 542 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 GRXCR1A8MXD5 290 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 C5orf67F2Z3F1 127 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 IGLV3-25P01717 112 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 RB1P06400 928 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 MYOGP15173 224 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 ADRA1BP35368 520 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 COILP38432 576 aaPredicted RBP21.85■■□□□ 1.09
VPS28-208ENST00000527797 FNTAP49354 379 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 SLC7A5Q01650 507 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 UBE3AQ05086 875 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 TFDP2Q14188 446 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 VEPH1Q14D04 833 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 CCNG2Q16589 344 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 PPP6R3Q5H9R7 873 aaPredicted RBP21.85■■□□□ 1.09
VPS28-208ENST00000527797 EFHC2Q5JST6 749 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 CCDC137Q6PK04 289 aaKnown RBP21.85■■□□□ 1.09
VPS28-208ENST00000527797 BBS12Q6ZW61 710 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 SPPL3Q8TCT6 385 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 HDAC7Q8WUI4 952 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 RNF34Q969K3 372 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 PNKPQ96T60 521 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 ZNF670Q9BS34 389 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 EMILIN2Q9BXX0 1053 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 WDCPQ9H6R7 721 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 ENTPD7Q9NQZ7 604 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 R3HDM2Q9Y2K5 976 aaKnown RBP21.85■■□□□ 1.09
VPS28-208ENST00000527797 IRAK3Q9Y616 596 aa21.85■■□□□ 1.09
VPS28-208ENST00000527797 MKI67P46013 3256 aaKnown RBP21.85■■□□□ 1.09
VPS28-208ENST00000527797 ZNF487B1APH4 448 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 CST8O60676 142 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 ADH1AP07327 375 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 MCM3P25205 808 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 DR1Q01658 176 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 MMRN1Q13201 1228 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 DHX34Q14147 1143 aaKnown RBP21.84■■□□□ 1.09
VPS28-208ENST00000527797 TAF12Q16514 161 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 CCDC105Q8IYK2 499 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 POF1BQ8WVV4 589 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 RUBCNQ92622 972 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 KLHL5Q96PQ7 755 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 RNF157Q96PX1 679 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 STIM2Q9P246 746 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 PCYOX1Q9UHG3 505 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 DMGDHQ9UI17 866 aaKnown RBP21.84■■□□□ 1.09
VPS28-208ENST00000527797 COL4A4P53420 1690 aaPredicted RBP21.84■■□□□ 1.09
VPS28-208ENST00000527797 IRAK2O43187 625 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 RARGP13631 454 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 IL4RP24394 825 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 ERVFC1P60507 584 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 SCAPQ12770 1279 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 ANKRD20A8PQ5CZ79 823 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 FAM109BQ6ICB4 259 aaPredicted RBP21.84■■□□□ 1.09
VPS28-208ENST00000527797 MSANTD2Q6P1R3 559 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 TTC27Q6P3X3 843 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 TTC13Q8NBP0 860 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 PDZD8Q8NEN9 1154 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.84■■□□□ 1.09
VPS28-208ENST00000527797 ATG4AQ8WYN0 398 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 OVCA2Q8WZ82 227 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 CASP10Q92851 521 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 SERPINB11Q96P15 392 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 KCTD15Q96SI1 283 aaPredicted RBP21.84■■□□□ 1.09
VPS28-208ENST00000527797 UBE2OQ9C0C9 1292 aaKnown RBP21.84■■□□□ 1.09
VPS28-208ENST00000527797 OLA1Q9NTK5 396 aaKnown RBP21.84■■□□□ 1.09
VPS28-208ENST00000527797 MTMR10Q9NXD2 777 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 SFMBT1Q9UHJ3 866 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 NUDT5Q9UKK9 219 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 RAB21Q9UL25 225 aa21.84■■□□□ 1.09
VPS28-208ENST00000527797 HEXIM1O94992 359 aaKnown RBP21.83■■□□□ 1.08
VPS28-208ENST00000527797 ZDHHC11BP0C7U3 371 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 ARL4AP40617 200 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 EPHB3P54753 998 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 DYNLT1P63172 113 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 TWF1Q12792 350 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 EIF4EBP2Q13542 120 aaPredicted RBP21.83■■□□□ 1.08
VPS28-208ENST00000527797 SNX1Q13596 522 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 WDR93Q6P2C0 686 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 MRPL43Q8N983 215 aaKnown RBP21.83■■□□□ 1.08
VPS28-208ENST00000527797 ANKRD7Q92527 254 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 PLEKHA4Q9H4M7 779 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 TLR9Q9NR96 1032 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.83■■□□□ 1.081e-6■■□□□ 14.1
VPS28-208ENST00000527797 PCDHA11Q9Y5I1 949 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 INSL5Q9Y5Q6 135 aa21.83■■□□□ 1.08
VPS28-208ENST00000527797 FAM187AA6NFU0 413 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 TTI1O43156 1089 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 TGM5O43548 720 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 LPXNO60711 386 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 ARHGEF15O94989 841 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 CA3P07451 260 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 KLRC2P26717 231 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 PLD1Q13393 1074 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 BRMS1LQ5PSV4 323 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 PLPP4Q5VZY2 271 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 PYROXD2Q8N2H3 581 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 MICAL1Q8TDZ2 1067 aa21.82■■□□□ 1.08
VPS28-208ENST00000527797 FAF2Q96CS3 445 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms