RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CCDC47Q96A33 483 aaKnown RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 ARL8AQ96BM9 186 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 EDC3Q96F86 508 aaKnown RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 TTPALQ9BTX7 342 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 NACA2Q9H009 215 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 NRDE2Q9H7Z3 1164 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 FLRT1Q9NZU1 646 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 SAP30BPQ9UHR5 308 aaKnown RBP5.94□□□□□ -1.46
NUP54-218ENST00000515460 ZBTB21Q9ULJ3 1066 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 RABL2BQ9UNT1 228 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 DMRT1Q9Y5R6 373 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 FPGT-TNNI3KV9GXZ4 949 aa5.94□□□□□ -1.46
NUP54-218ENST00000515460 SPTAN1Q13813 2472 aaKnown RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 IGSF10Q6WRI0 2623 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 TAF4O00268 1085 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 ENPP3O14638 875 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 NRP1O14786 923 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 MTSS1O43312 755 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 CEP104O60308 925 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 NRP2O60462 931 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 FAM20BO75063 409 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 GH2P01242 217 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 TUBB4AP04350 444 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 RPL17P18621 184 aaKnown RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 XPAP23025 273 aaPredicted RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 ATICP31939 592 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 HNRNPH1P31943 449 aaKnown RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 KIR2DL3P43628 341 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 MAN2A2P49641 1150 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 NPEPPSP55786 919 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 ADAM8P78325 824 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 FPGSQ05932 587 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 EIF2B5Q13144 721 aaKnown RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 SLMAPQ14BN4 828 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 PCBP1Q15365 356 aaKnown RBP eCLIP5.93□□□□□ -1.46
NUP54-218ENST00000515460 KRTAP15-1Q3LI76 137 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 WLSQ5T9L3 541 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 ANKRD45Q5TZF3 282 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 KIAA0907Q7Z7F0 614 aaPredicted RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 SPATS2Q86XZ4 545 aaKnown RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 CCDC50Q8IVM0 306 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 DCLK2Q8N568 766 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 TMEM57Q8N5G2 664 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 CDYL2Q8N8U2 506 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 MAB21L3Q8N8X9 362 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 ZNF610Q8N9Z0 462 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 B4GALNT2Q8NHY0 566 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 ACER1Q8TDN7 264 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 ZFAND2BQ8WV99 257 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 TBC1D5Q92609 795 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 EAF2Q96CJ1 260 aaPredicted RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 PGBD4Q96DM1 585 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 CDK5RAP3Q96JB5 506 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 CABS1Q96KC9 395 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 C12orf42Q96LP6 360 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 AGAP2Q99490 1192 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 SENP7Q9BQF6 1050 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 PAGR1Q9BTK6 254 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 GPR87Q9BY21 358 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 CCDC8Q9H0W5 538 aaPredicted RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 UBE2ZQ9H832 354 aaPredicted RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 NCDNQ9UBB6 729 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 SWAP70Q9UH65 585 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 ITM2BQ9Y287 266 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 RABGAP1Q9Y3P9 1069 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 PCDHB6Q9Y5E3 794 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 COL4A4P53420 1690 aaPredicted RBP5.93□□□□□ -1.46
NUP54-218ENST00000515460 CCDC171Q6TFL3 1326 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 CACNA1FO60840 1977 aa5.93□□□□□ -1.46
NUP54-218ENST00000515460 ITPR1Q14643 2758 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 TGM5O43548 720 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 RAB11FIP3O75154 756 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 PEX14O75381 377 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 SURF6O75683 361 aaKnown RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 IPO13O94829 963 aaKnown RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 PCDH8O95206 1070 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 PNMA6AP0CW24 399 aaPredicted RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 ZKSCAN1P17029 563 aaPredicted RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 BDNFP23560 247 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 GUCY1A2P33402 732 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 RGS2P41220 211 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 PLCD1P51178 756 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 E2F5Q15329 346 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 CLPPQ16740 277 aaPredicted RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 LEXMQ3ZCV2 418 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 LRRC23Q53EV4 343 aaPredicted RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 HERC4Q5GLZ8 1057 aaPredicted RBP5.92□□□□□ -1.46
NUP54-218ENST00000515460 FKBP15Q5T1M5 1219 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 CCDC70Q6NSX1 233 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 FBXO38Q6PIJ6 1188 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 UNQ6494/PRO21346Q6UXR6 183 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 ARHGAP22Q7Z5H3 698 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 RSPH3Q86UC2 560 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 UNC5BQ8IZJ1 945 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 CMTM4Q8IZR5 234 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 TRPV1Q8NER1 839 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 MAGEC3Q8TD91 643 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 KCNG4Q8TDN1 519 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 GIMAP1Q8WWP7 306 aa5.92□□□□□ -1.46
NUP54-218ENST00000515460 SOCS4Q8WXH5 440 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms