RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 GBP1P32455 592 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 SLC8A3P57103 927 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 NME3Q13232 169 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 PREPLQ4J6C6 727 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 CCDC183Q5T5S1 534 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 SLC30A5Q8TAD4 765 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 SHKBP1Q8TBC3 707 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 CSGALNACT1Q8TDX6 532 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 TNIP3Q96KP6 325 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 GDAP1L1Q96MZ0 367 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 TRMT61BQ9BVS5 477 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 SLC46A2Q9BY10 475 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 S1PR5Q9H228 398 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 KCNF1Q9H3M0 494 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 TJP2Q9UDY2 1190 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 NR2E1Q9Y466 385 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 CPQQ9Y646 472 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 R4GN57 208 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 FAM47DPA6NHR8 397 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 TIMM44O43615 452 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 ARSAP15289 507 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 SLC5A3P53794 718 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 ADIGQ0VDE8 80 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 TDRD12Q587J7 1177 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 TTI2Q6NXR4 508 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 FAM35AQ86V20 835 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 NOTCH4Q99466 2003 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 STRA6Q9BX79 667 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 TMEM8AQ9HCN3 771 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 CFAP97Q9P2B7 532 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 MYO1AQ9UBC5 1043 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 TSPAN16Q9UKR8 245 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 NUMA1Q14980 2115 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 ANO9A1A5B4 782 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 GOLGA6L9A6NEM1 432 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 FAM170BA6NMN3 283 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 NDUFAB1O14561 156 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 ZNF263O14978 683 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 ZNF18P17022 549 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 YWHAQP27348 245 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 NLRP12P59046 1061 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 TDGQ13569 410 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 C1orf220Q5T0J3 134 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 OR6B2Q6IFH4 312 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 SLC8B1Q6J4K2 584 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 PDE12Q6L8Q7 609 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 PRR23BQ6ZRT6 265 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 NOP9Q86U38 636 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 GBP7Q8N8V2 638 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 RBBP8NLQ8NC74 664 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 DHTKD1Q96HY7 919 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 LRFN3Q9BTN0 628 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 INTS2Q9H0H0 1204 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 ST6GALNAC4Q9H4F1 302 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 ANO10Q9NW15 660 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 GALNT8Q9NY28 637 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 CDH7Q9ULB5 785 aa8.24□□□□□ -1.09
LIMCH1-219ENST00000514096 CEP295Q9C0D2 2601 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 OR6C75A6NL08 312 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 FSCN2O14926 492 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 LILRB3O75022 631 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 TKTL1P51854 596 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 EHHADHQ08426 723 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 PON2Q15165 354 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 POM121L1PQ3SYA9 428 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 LILRA6Q6PI73 481 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 POTEHQ6S545 545 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 C1orf131Q8NDD1 294 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 SH3RF2Q8TEC5 729 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 MFSD14AQ96MC6 490 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 MED15Q96RN5 788 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 CDCA3Q99618 268 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 XYLT2Q9H1B5 865 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 FAM204AQ9H8W3 233 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 FAM114A2Q9NRY5 505 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 KLC4Q9NSK0 619 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 DZANK1Q9NVP4 752 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 DNAJC12Q9UKB3 198 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 TRAF3IP3Q9Y228 551 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 TRIM64CA6NLI5 447 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 SFSWAPQ12872 951 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 RALGDSQ12967 914 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 CUL2Q13617 745 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 PIGZQ86VD9 579 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 REXO1L1PQ8IX06 675 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 FUKQ8N0W3 1084 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 STYXL1Q9Y6J8 313 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 PIAS3Q9Y6X2 628 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 ARID2Q68CP9 1835 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 A0A1W2PQH9 124 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 ARHGEF37A1IGU5 675 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 BOLA2-SMG1P6H3BVE0 249 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 RNF225M0QZC1 329 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 TEX33O43247 280 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 TLR5O60602 858 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 VNN2O95498 520 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 ASS1P00966 412 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 ALADP13716 330 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 DNA2P51530 1060 aa8.23□□□□□ -1.09
LIMCH1-219ENST00000514096 RPL10AP62906 217 aaKnown RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms