RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 METTL5Q9NRN9 209 aaKnown RBP11.35□□□□□ -0.59
VPS13D-210ENST00000489961 TAS2R14Q9NYV8 317 aa11.35□□□□□ -0.59
VPS13D-210ENST00000489961 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.35□□□□□ -0.59
VPS13D-210ENST00000489961 IMPACTQ9P2X3 320 aa11.35□□□□□ -0.59
VPS13D-210ENST00000489961 FBXL21Q9UKT6 434 aa11.35□□□□□ -0.59
VPS13D-210ENST00000489961 STAP1Q9ULZ2 295 aa11.35□□□□□ -0.59
VPS13D-210ENST00000489961 ZNF510Q9Y2H8 683 aa11.35□□□□□ -0.59
VPS13D-210ENST00000489961 UNC80Q8N2C7 3258 aa11.35□□□□□ -0.59
VPS13D-210ENST00000489961 A0A087X0T9 212 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 ANKRD62A6NC57 917 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 MSI1O43347 362 aaKnown RBP11.34□□□□□ -0.59
VPS13D-210ENST00000489961 AKR1B10O60218 316 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 NFATC1O95644 943 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 TRUB2O95900 331 aaKnown RBP11.34□□□□□ -0.59
VPS13D-210ENST00000489961 FAM228BP0C875 321 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 MYBL1P10243 752 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 KRT3P12035 628 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 HARS2P49590 506 aaKnown RBP11.34□□□□□ -0.59
VPS13D-210ENST00000489961 TBX4P57082 545 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 SLC18A3Q16572 532 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 DNAJC24Q6P3W2 148 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 HTR3DQ70Z44 454 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 ARCQ7LC44 396 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 PHLDB2Q86SQ0 1253 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 TAC4Q86UU9 113 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 UNC45BQ8IWX7 931 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 CPA6Q8N4T0 437 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 SPC24Q8NBT2 197 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 C3orf20Q8ND61 904 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 KHSRPQ92945 711 aaKnown RBP eCLIP11.34□□□□□ -0.593e-6■■■□□ 14.8
VPS13D-210ENST00000489961 ATP2A3Q93084 1043 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 CCDC42Q96M95 316 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 PANX2Q96RD6 677 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 CHP1Q99653 195 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 FAM83CQ9BQN1 747 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 ISCUQ9H1K1 167 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 EBF3Q9H4W6 596 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 FAM204AQ9H8W3 233 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 TMEM51Q9NW97 253 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 WNT16Q9UBV4 365 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 TMEM59LQ9UK28 342 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 TLR6Q9Y2C9 796 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 WNT6Q9Y6F9 365 aa11.34□□□□□ -0.59
VPS13D-210ENST00000489961 SIGLEC16A6NMB1 481 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 PI4K2BG5E9Z4 385 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 ARNTLO00327 626 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 SCAMP3O14828 347 aaKnown RBP11.33□□□□□ -0.6
VPS13D-210ENST00000489961 IRAK2O43187 625 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 RRM1P23921 792 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 CORO1AP31146 461 aaKnown RBP11.33□□□□□ -0.6
VPS13D-210ENST00000489961 SULT1E1P49888 294 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 RING1Q06587 406 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 SIGLEC14Q08ET2 396 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 NR1H3Q13133 447 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 RUNX3Q13761 415 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 EML3Q32P44 896 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 ITPRIPL2Q3MIP1 535 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 CCDC122Q5T0U0 273 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 NUGGCQ68CJ6 796 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 TRIM68Q6AZZ1 485 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 ALKBH5Q6P6C2 394 aaKnown RBP11.33□□□□□ -0.6
VPS13D-210ENST00000489961 BBS7Q8IWZ6 715 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 ADAM32Q8TC27 787 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 WBP2Q969T9 261 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 ZNF653Q96CK0 615 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 ASIC4Q96FT7 647 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 NPY6RQ99463 290 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 DDX23Q9BUQ8 820 aaKnown RBP11.33□□□□□ -0.6
VPS13D-210ENST00000489961 LINC00597Q9H2U6 94 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 NHEJ1Q9H9Q4 299 aaPredicted RBP11.33□□□□□ -0.6
VPS13D-210ENST00000489961 PARVAQ9NVD7 372 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 DDIT4Q9NX09 232 aa11.33□□□□□ -0.6
VPS13D-210ENST00000489961 CNOT8Q9UFF9 292 aaKnown RBP11.33□□□□□ -0.6
VPS13D-210ENST00000489961 COL4A2P08572 1712 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 SYNJ2BP-COX16A0A087WUM0 186 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 M0QYT0 321 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 GREM1O60565 184 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 LATS1O95835 1130 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 F9P00740 461 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 IGLV3-25P01717 112 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 IGLV3-27P01718 113 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 APOEP02649 317 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 SLC2A3P11169 496 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 GLULP15104 373 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 ARSAP15289 507 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 PDGFRAP16234 1089 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 DESP17661 470 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 ABCB4P21439 1286 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 SDC4P31431 198 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 CHKAP35790 457 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 FLT3P36888 993 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 SLC11A2P49281 568 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 PITX1P78337 314 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-210ENST00000489961 AMPD2Q01433 879 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 PRKCQQ04759 706 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 DEUP1Q05D60 604 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 GFPT1Q06210 699 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-210ENST00000489961 TNK2Q07912 1038 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 NME3Q13232 169 aa11.32□□□□□ -0.6
VPS13D-210ENST00000489961 MLF2Q15773 248 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms