RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CLCN5P51795 746 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 CDK17Q00537 523 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 E2F5Q15329 346 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 ASIC2Q16515 512 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 MIIPQ5JXC2 388 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 PPP1R2P3Q6NXS1 205 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 LRSAM1Q6UWE0 723 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 PAQR9Q6ZVX9 377 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 TTC30AQ86WT1 665 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 RALGPS2Q86X27 583 aaPredicted RBP8.41□□□□□ -1.06
USP40-216ENST00000485943 ERICH1Q86X53 443 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 ZNF677Q86XU0 584 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 IRF2BP1Q8IU81 584 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 RNF214Q8ND24 703 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 LMO3Q8TAP4 145 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 OSCP1Q8WVF1 389 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 IRGQQ8WZA9 623 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 SHC3Q92529 594 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 EDEM1Q92611 657 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 OTUB2Q96DC9 234 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 PPP1R13BQ96KQ4 1090 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 KREMEN1Q96MU8 473 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 SERPINB11Q96P15 392 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 LRFN3Q9BTN0 628 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 NUP58Q9BVL2 599 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 LRRC3Q9BY71 257 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 PLA2G2FQ9BZM2 168 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 DEF6Q9H4E7 631 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 FAM204AQ9H8W3 233 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 PLCB1Q9NQ66 1216 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 GTSE1Q9NYZ3 720 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 CLIC5Q9NZA1 410 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 COX16Q9P0S2 106 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 NUDT5Q9UKK9 219 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 STAP1Q9ULZ2 295 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 DOLKQ9UPQ8 538 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 PAXBP1Q9Y5B6 917 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.41□□□□□ -1.06
USP40-216ENST00000485943 WNT6Q9Y6F9 365 aa8.41□□□□□ -1.06
USP40-216ENST00000485943 A0A0C4DFX4 3053 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 PATJQ8NI35 1801 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 NCANO14594 1321 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 E2F8A0AVK6 867 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 F8VZ95 297 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 SPECC1L-ADORA2AF8WAN1 911 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 SCAMP3O14828 347 aaKnown RBP8.4□□□□□ -1.06
USP40-216ENST00000485943 DKK1O94907 266 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 OAS1P00973 400 aaKnown RBP8.4□□□□□ -1.06
USP40-216ENST00000485943 APODP05090 189 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 ADH5P11766 374 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 ATP1A3P13637 1013 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 CYP11B1P15538 503 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 ABCB4P21439 1286 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 CD72P21854 359 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 WEE1P30291 646 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 CHKAP35790 457 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 GGCXP38435 758 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 SLC11A2P49281 568 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 RNASE9P60153 205 aaKnown RBP8.4□□□□□ -1.06
USP40-216ENST00000485943 SLC7A9P82251 487 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 FANCCQ00597 558 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 GAD2Q05329 585 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 FCHO2Q0JRZ9 810 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 PON2Q15165 354 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 EFHC1Q5JVL4 640 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 SFMBT2Q5VUG0 894 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 BSPRYQ5W0U4 402 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 TRIM68Q6AZZ1 485 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 SDE2Q6IQ49 451 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 TRIM72Q6ZMU5 477 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 TPGS1Q6ZTW0 290 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 GPRIN1Q7Z2K8 1008 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 BMP8AQ7Z5Y6 402 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 SLC47A2Q86VL8 602 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 UNC45BQ8IWX7 931 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 DHX40Q8IX18 779 aaKnown RBP8.4□□□□□ -1.06
USP40-216ENST00000485943 DRC7Q8IY82 874 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 C1orf131Q8NDD1 294 aaKnown RBP8.4□□□□□ -1.06
USP40-216ENST00000485943 ZMIZ2Q8NF64 920 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 DDI1Q8WTU0 396 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 CPLX3Q8WVH0 158 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 KCTD13Q8WZ19 329 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 BHMTQ93088 406 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 PLD4Q96BZ4 506 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 IQCDQ96DY2 449 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.4□□□□□ -1.06
USP40-216ENST00000485943 SELENOOQ9BVL4 669 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 NUCKS1Q9H1E3 243 aaKnown RBP8.4□□□□□ -1.06
USP40-216ENST00000485943 ECT2Q9H8V3 914 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 CYLDQ9NQC7 956 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 TJP2Q9UDY2 1190 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 CDV3Q9UKY7 258 aaKnown RBP8.4□□□□□ -1.06
USP40-216ENST00000485943 CCL26Q9Y258 94 aa8.4□□□□□ -1.06
USP40-216ENST00000485943 FAM170AA1A519 330 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 E5RJQ4 531 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 NEDD8-MDP1E9PL57 170 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 GOLGA8SH3BPF8 625 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 RNF225M0QZC1 329 aaPredicted RBP8.39□□□□□ -1.07
USP40-216ENST00000485943 TNFRSF10BO14763 440 aa8.39□□□□□ -1.07
USP40-216ENST00000485943 MDM4O15151 490 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms