RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 FMO2Q99518 471 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 CDCA3Q99618 268 aaPredicted RBP7.98□□□□□ -1.13
USP4-211ENST00000485450 TBC1D10AQ9BXI6 508 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 SEMA6BQ9H3T3 888 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 TLE6Q9H808 572 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 SCN1AP35498 2009 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 EPOPA6NHQ4 379 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 WEE1P30291 646 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 AP3M2P53677 418 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 IGBP1P78318 339 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 STK4Q13043 487 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 PPP1R13LQ8WUF5 828 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 SLC22A17Q8WUG5 538 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 ABTB1Q969K4 478 aaPredicted RBP7.98□□□□□ -1.13
USP4-211ENST00000485450 CEP63Q96MT8 703 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 TUBGCP5Q96RT8 1024 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 MAK16Q9BXY0 300 aaKnown RBP7.98□□□□□ -1.13
USP4-211ENST00000485450 CEP72Q9P209 647 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 TTI1O43156 1089 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 DNA2P51530 1060 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 AP1B1Q10567 949 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 FAM26FQ5R3K3 315 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 DENND2CQ68D51 928 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 CGB2Q6NT52 195 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 FAM20CQ8IXL6 584 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 BCL7CQ8WUZ0 217 aaPredicted RBP7.98□□□□□ -1.13
USP4-211ENST00000485450 GRAMD1AQ96CP6 724 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 SLC7A6OSQ96CW6 309 aaPredicted RBP7.98□□□□□ -1.13
USP4-211ENST00000485450 CDK5RAP3Q96JB5 506 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 TGS1Q96RS0 853 aaKnown RBP7.98□□□□□ -1.13
USP4-211ENST00000485450 ZMAT5Q9UDW3 170 aaKnown RBP7.98□□□□□ -1.13
USP4-211ENST00000485450 PACSIN2Q9UNF0 486 aaPredicted RBP7.98□□□□□ -1.13
USP4-211ENST00000485450 NOD1Q9Y239 953 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 SIK3Q9Y2K2 1263 aa7.98□□□□□ -1.13
USP4-211ENST00000485450 CHD7Q9P2D1 2997 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 K7ERI5 159 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 PSMA7O14818 248 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 SLC16A4O15374 487 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 PEX14O75381 377 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 ACRP10323 421 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 DNAJB2P25686 324 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 DEPDC1Q5TB30 811 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 KIAA0319Q5VV43 1072 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 KLHL35Q6PF15 583 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 Q6ZNX1 250 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 LRRC74BQ6ZQY2 392 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 MARK2Q7KZI7 788 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 SPATA24Q86W54 205 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 GRAMD2AQ8IUY3 354 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 KBTBD2Q8IY47 623 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 GLIS3Q8NEA6 775 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 CMASQ8NFW8 434 aaPredicted RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 CKAP2Q8WWK9 683 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 DDX50Q9BQ39 737 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 DDX47Q9H0S4 455 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 MYLK2Q9H1R3 596 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 RSAD1Q9HA92 442 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 TBC1D13Q9NVG8 400 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 MIOSQ9NXC5 875 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 MTMR10Q9NXD2 777 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 CNTN6Q9UQ52 1028 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 STXBP5LQ9Y2K9 1186 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 UTP11Q9Y3A2 253 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 MUC22E2RYF6 1773 aaPredicted RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 LCHNA4D1U4 455 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 LRRC53A6NM62 1247 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 PGRMC1O00264 195 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 KCNK3O14649 394 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 VAV1P15498 845 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 NMT1P30419 496 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 PPM1AP35813 382 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 RASSF2P50749 326 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 ADARP55265 1226 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 DSG1Q02413 1049 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 SLC34A1Q06495 639 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 RPS6KA1Q15418 735 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 SURF1Q15526 300 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 CCDC6Q16204 474 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 WDR72Q3MJ13 1102 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 KHDC1Q4VXA5 237 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 NOMO2Q5JPE7 1267 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 SPDYAQ5MJ70 313 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 HGSNATQ68CP4 663 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 STXBP4Q6ZWJ1 553 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 C11orf74Q86VG3 221 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 WDR49Q8IV35 697 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 FAM178BQ8IXR5 827 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 RAVER1Q8IY67 606 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 CSGALNACT2Q8N6G5 542 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 METTL13Q8N6R0 699 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 LRRC52Q8N7C0 313 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 KIAA1958Q8N8K9 716 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 BAP1Q92560 729 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 HAUS1Q96CS2 278 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 CNOT6LQ96LI5 555 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 ZMAT2Q96NC0 199 aaKnown RBP7.97□□□□□ -1.13
USP4-211ENST00000485450 HEPHQ9BQS7 1158 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 ERP44Q9BS26 406 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 HGH1Q9BTY7 390 aa7.97□□□□□ -1.13
USP4-211ENST00000485450 NRDE2Q9H7Z3 1164 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms