RNA–Protein interactions for RNA: ENST00000480057.1

VTI1A-204, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-204	ENST00000480057	GOLGA8K	D6RF30	607 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	AGPS	O00116	658 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	DNALI1	O14645	258 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	TP73	O15350	636 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	RTN3	O95197	1032 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	RBP3	P10745	1247 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	OAS2	P29728	719 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	HTR7	P34969	479 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	ADRA1B	P35368	520 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	ALDH7A1	P49419	539 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	CXCR3	P49682	368 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	CTCF	P49711	727 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	PMS2	P54278	862 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	YWHAG	P61981	247 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	RPL10A	P62906	217 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	DYNLT1	P63172	113 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	ROR1	Q01973	937 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	DHX9	Q08211	1270 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	MMRN1	Q13201	1228 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	EIF4EBP2	Q13542	120 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	MORF4L2	Q15014	288 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	CA9	Q16790	459 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	LRRC26	Q2I0M4	334 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	BRMS1L	Q5PSV4	323 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	SYPL2	Q5VXT5	272 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	IZUMO3	Q5VZ72	239 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	MFSD5	Q6N075	450 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	HIBCH	Q6NVY1	386 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	FAM131B	Q86XD5	332 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	CDKL3	Q8IVW4	592 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	GPR65	Q8IYL9	337 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	CMTR2	Q8IYT2	770 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	TMEM199	Q8N511	208 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	CCDC185	Q8N715	623 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	RSAD2	Q8WXG1	361 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	PIK3R5	Q8WYR1	880 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	ZNF689	Q96CS4	500 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	PAWR	Q96IZ0	340 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	CSPG4P5	Q96PW8	444 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	KCTD15	Q96SI1	283 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	RHOBTB2	Q9BYZ6	727 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	PABPC3	Q9H361	631 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	SMOC2	Q9H3U7	446 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	CWH43	Q9H720	699 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	WDR6	Q9NNW5	1121 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	GPATCH2L	Q9NWQ4	482 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	ABI2	Q9NYB9	513 aa	Predicted RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	CALCOCO1	Q9P1Z2	691 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	MTRR	Q9UBK8	725 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	ANAPC5	Q9UJX4	755 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	TPX2	Q9ULW0	747 aa	Known RBP	11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	SHOC2	Q9UQ13	582 aa		11.44	□□□□□ -0.58
VTI1A-204	ENST00000480057	SGK1	O00141	431 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	SYF2	O95926	243 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	NUDT17	P0C025	328 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	OR4Q2	P0C623	313 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	HAPLN1	P10915	354 aa	Predicted RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	PECAM1	P16284	738 aa	Predicted RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	LAG3	P18627	525 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	GGCX	P38435	758 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	PSEN1	P49768	467 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	ITGA8	P53708	1063 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	ATXN1	P54253	815 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	FAM193A	P78312	1265 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	CBLB	Q13191	982 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	UAP1	Q16222	522 aa	Predicted RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	USP41	Q3LFD5	358 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	PPP6R3	Q5H9R7	873 aa	Predicted RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	BTBD8	Q5XKL5	378 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	SLC8B1	Q6J4K2	584 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	MSANTD2	Q6P1R3	559 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	HOOK3	Q86VS8	718 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	MON1A	Q86VX9	555 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	CEP57	Q86XR8	500 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	SCN4B	Q8IWT1	228 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	ZCCHC9	Q8N567	271 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	DQX1	Q8TE96	717 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	RNF139	Q8WU17	664 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	ZIM3	Q96PE6	472 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	TMEM121	Q9BTD3	319 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	TMEM106C	Q9BVX2	250 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	OSBPL2	Q9H1P3	480 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	FAM204A	Q9H8W3	233 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	RC3H2	Q9HBD1	1191 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	PIGV	Q9NUD9	493 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	DDIT4	Q9NX09	232 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	CLIC5	Q9NZA1	410 aa		11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	CWC15	Q9P013	229 aa	Known RBP	11.43	□□□□□ -0.58
VTI1A-204	ENST00000480057	MTMR11	A4FU01	709 aa		11.42	□□□□□ -0.58
VTI1A-204	ENST00000480057		H3BQF6	201 aa		11.42	□□□□□ -0.58
VTI1A-204	ENST00000480057	IRAK2	O43187	625 aa		11.42	□□□□□ -0.58
VTI1A-204	ENST00000480057	CPB1	P15086	417 aa		11.42	□□□□□ -0.58
VTI1A-204	ENST00000480057	PITX1	P78337	314 aa	Predicted RBP	11.42	□□□□□ -0.58
VTI1A-204	ENST00000480057	SEMA3B	Q13214	749 aa		11.42	□□□□□ -0.58
VTI1A-204	ENST00000480057	NME3	Q13232	169 aa		11.42	□□□□□ -0.58
VTI1A-204	ENST00000480057	MTA1	Q13330	715 aa		11.42	□□□□□ -0.58
VTI1A-204	ENST00000480057	PPP2R5D	Q14738	602 aa		11.42	□□□□□ -0.58
VTI1A-204	ENST00000480057	PAFAH1B3	Q15102	231 aa	Known RBP	11.42	□□□□□ -0.58

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