RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 TOB1P50616 345 aaPredicted RBP6.13□□□□□ -1.43
UPF3A-205ENST00000479712 KRT17Q04695 432 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 POU5F1BQ06416 359 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 SPARCL1Q14515 664 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 MGAT5BQ3V5L5 792 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 FAM102AQ5T9C2 384 aaPredicted RBP6.13□□□□□ -1.43
UPF3A-205ENST00000479712 METRNLQ641Q3 311 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 SPTY2D1Q68D10 685 aaPredicted RBP6.13□□□□□ -1.43
UPF3A-205ENST00000479712 NAIF1Q69YI7 327 aaPredicted RBP6.13□□□□□ -1.43
UPF3A-205ENST00000479712 TAF2Q6P1X5 1199 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 LAYNQ6UX15 382 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 NBPF5PQ86XG9 351 aaPredicted RBP6.13□□□□□ -1.43
UPF3A-205ENST00000479712 TRAPPC12Q8WVT3 735 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 CLMNQ96JQ2 1002 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 MNTQ99583 582 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 LBHD1Q9BQE6 289 aaPredicted RBP6.13□□□□□ -1.43
UPF3A-205ENST00000479712 PAGR1Q9BTK6 254 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 GPR87Q9BY21 358 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 MAGEH1Q9H213 219 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 DHX36Q9H2U1 1008 aaKnown RBP6.13□□□□□ -1.43
UPF3A-205ENST00000479712 XPNPEP3Q9NQH7 507 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 HSFX1Q9UBD0 423 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 ATP11BQ9Y2G3 1177 aa6.13□□□□□ -1.43
UPF3A-205ENST00000479712 AQP12BA6NM10 295 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 GOLGA6L6A8MZA4 724 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 ACKR2O00590 384 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 GPR42O15529 346 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 SPATA31D3P0C874 917 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 PTDSS1P48651 473 aaKnown RBP6.12□□□□□ -1.43
UPF3A-205ENST00000479712 LOXL3P58215 753 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 LILRA4P59901 499 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 AKNAD1Q5T1N1 836 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 CACHD1Q5VU97 1274 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 PLAG1Q6DJT9 500 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 FCRL6Q6DN72 434 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 USP17L6PQ6QN14 398 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 CRTC1Q6UUV9 634 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 GLB1LQ6UWU2 654 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 SPOCD1Q6ZMY3 1216 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 SPATA31D4Q6ZUB0 917 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 HTR3DQ70Z44 454 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 LIMS2Q7Z4I7 341 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 C1QL4Q86Z23 238 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 POC1BQ8TC44 478 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 ZNF384Q8TF68 577 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 MED15Q96RN5 788 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 NAP1L4Q99733 375 aaKnown RBP6.12□□□□□ -1.43
UPF3A-205ENST00000479712 TMEM120AQ9BXJ8 343 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 KRTAP4-5Q9BYR2 181 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 C11orf49Q9H6J7 331 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 AS3MTQ9HBK9 375 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 CENPJQ9HC77 1338 aaPredicted RBP6.12□□□□□ -1.43
UPF3A-205ENST00000479712 VSX1Q9NZR4 365 aaPredicted RBP6.12□□□□□ -1.43
UPF3A-205ENST00000479712 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.12□□□□□ -1.43
UPF3A-205ENST00000479712 EIF2B4Q9UI10 523 aaKnown RBP6.12□□□□□ -1.43
UPF3A-205ENST00000479712 GTF2A1LQ9UNN4 478 aa6.12□□□□□ -1.43
UPF3A-205ENST00000479712 LAMB1P07942 1786 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 XIRP2A4UGR9 3374 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 A0A1W2PP64 1363 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 A0A1B0GTW7 788 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 TRIM38O00635 465 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 TOR1BO14657 336 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 PIP5K1BO14986 540 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 KCNQ3O43525 872 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 COMTP21964 271 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 FGFR4P22455 802 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 SERPINF1P36955 418 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 GCLCP48506 637 aaPredicted RBP6.11□□□□□ -1.43
UPF3A-205ENST00000479712 PXNP49023 591 aaPredicted RBP6.11□□□□□ -1.43
UPF3A-205ENST00000479712 MAN2A2P49641 1150 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 ZNF134P52741 427 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 ITGA8P53708 1063 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 RNASE9P60153 205 aaKnown RBP6.11□□□□□ -1.43
UPF3A-205ENST00000479712 HSD11B2P80365 405 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 PTK2BQ14289 1009 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 UBXN11Q5T124 520 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 FOXR2Q6PJQ5 311 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.11□□□□□ -1.43
UPF3A-205ENST00000479712 Q6ZRM9 215 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 USP49Q70CQ1 688 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 ASCL5Q7RTU5 278 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 DGLUCYQ7Z3D6 616 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 ZNF280BQ86YH2 543 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 ZNF808Q8N4W9 903 aaPredicted RBP6.11□□□□□ -1.43
UPF3A-205ENST00000479712 PAF1Q8N7H5 531 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 FAM71BQ8TC56 605 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 PNISRQ8TF01 805 aaKnown RBP6.11□□□□□ -1.43
UPF3A-205ENST00000479712 TBC1D20Q96BZ9 403 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 FAM89AQ96GI7 184 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 LRIG1Q96JA1 1093 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 KCNC2Q96PR1 638 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 ZSWIM1Q9BR11 485 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 UBA5Q9GZZ9 404 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 SMOC2Q9H3U7 446 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 CTTNBP2NLQ9P2B4 639 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 IGSF9Q9P2J2 1179 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 CAPN11Q9UMQ6 739 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 GPR52Q9Y2T5 361 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 CDY1Q9Y6F8 540 aa6.11□□□□□ -1.43
UPF3A-205ENST00000479712 FAM208BQ5VWN6 2430 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms