RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 CCDC86Q9H6F5 360 aaKnown RBP12.62□□□□□ -0.39
HDAC6-219ENST00000476625 GAREM1Q9H706 876 aa12.62□□□□□ -0.39
HDAC6-219ENST00000476625 CSNK1G1Q9HCP0 422 aa12.62□□□□□ -0.39
HDAC6-219ENST00000476625 TLR8Q9NR97 1041 aaKnown RBP12.62□□□□□ -0.39
HDAC6-219ENST00000476625 USP36Q9P275 1121 aaKnown RBP12.62□□□□□ -0.39
HDAC6-219ENST00000476625 CILPO75339 1184 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 PRB1P04280 392 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 ATICP31939 592 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 ATP5C1P36542 298 aaKnown RBP12.61□□□□□ -0.39
HDAC6-219ENST00000476625 ASPAP45381 313 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 NASPP49321 788 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-219ENST00000476625 TPMTP51580 245 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 IL9RQ01113 521 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 HLA-BQ31612 363 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 KCNT1Q5JUK3 1230 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 C10orf120Q5SQS8 335 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 C1orf220Q5T0J3 134 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 FYB2Q5VWT5 728 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 LINC00301Q8NCQ3 95 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 PARD3BQ8TEW8 1205 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 SNX19Q92543 992 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 C7orf25Q9BPX7 421 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 C6orf106Q9H6K1 298 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-219ENST00000476625 APOBEC3GQ9HC16 384 aaKnown RBP12.61□□□□□ -0.39
HDAC6-219ENST00000476625 CYLDQ9NQC7 956 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 TM7SF3Q9NS93 570 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.61□□□□□ -0.39
HDAC6-219ENST00000476625 RASAL2Q9UJF2 1139 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.61□□□□□ -0.39
HDAC6-219ENST00000476625 CELSR3Q9NYQ7 3312 aa12.61□□□□□ -0.39
HDAC6-219ENST00000476625 A0A1B0GTW7 788 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 KIF20AO95235 890 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 FAM163BP0C2L3 166 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 CSNK1EP49674 416 aaKnown RBP12.6□□□□□ -0.39
HDAC6-219ENST00000476625 ZNF234Q14588 700 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 WDR45BQ5MNZ6 344 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 SYCP2LQ5T4T6 812 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 UNC13DQ70J99 1090 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 RABEPKQ7Z6M1 372 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 TMPRSS6Q8IU80 811 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 RBBP8NLQ8NC74 664 aaPredicted RBP12.6□□□□□ -0.39
HDAC6-219ENST00000476625 BAHD1Q8TBE0 780 aaPredicted RBP12.6□□□□□ -0.39
HDAC6-219ENST00000476625 DNASE2BQ8WZ79 361 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 NDRG1Q92597 394 aaKnown RBP12.6□□□□□ -0.39
HDAC6-219ENST00000476625 TNIP3Q96KP6 325 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 DUSP9Q99956 384 aaKnown RBP12.6□□□□□ -0.39
HDAC6-219ENST00000476625 FAM124BQ9H5Z6 455 aaPredicted RBP12.6□□□□□ -0.39
HDAC6-219ENST00000476625 VRTNQ9H8Y1 702 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 ITM2CQ9NQX7 267 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 WDR35Q9P2L0 1181 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 THAP10Q9P2Z0 257 aaPredicted RBP12.6□□□□□ -0.39
HDAC6-219ENST00000476625 NAGPAQ9UK23 515 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 LSM7Q9UK45 103 aaKnown RBP12.6□□□□□ -0.39
HDAC6-219ENST00000476625 SCML2Q9UQR0 700 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 SNX11Q9Y5W9 270 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 UBE4BO95155 1302 aa12.6□□□□□ -0.39
HDAC6-219ENST00000476625 METTL12A8MUP2 240 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 CBX4O00257 560 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 SPTLC2O15270 562 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 BCAT2O15382 392 aaPredicted RBP12.59□□□□□ -0.39
HDAC6-219ENST00000476625 POLR2DO15514 142 aaKnown RBP12.59□□□□□ -0.39
HDAC6-219ENST00000476625 HLA-DRAP01903 254 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 FAM200BP0CF97 657 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 TRIM49P0CI25 452 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 TRIM49CP0CI26 452 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 GNSP15586 552 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 CD58P19256 250 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 CORO1AP31146 461 aaKnown RBP12.59□□□□□ -0.39
HDAC6-219ENST00000476625 ACSL1P33121 698 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 RDXP35241 583 aaKnown RBP12.59□□□□□ -0.39
HDAC6-219ENST00000476625 CYP4F3Q08477 520 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 EFEMP1Q12805 493 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 SLC14A1Q13336 389 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 BMT2Q1RMZ1 405 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 NUDT18Q6ZVK8 323 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 CRYBG2Q8N1P7 616 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 KIAA0895Q8NCT3 520 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 C1orf216Q8TAB5 229 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 CYB5D2Q8WUJ1 264 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 PIWIL1Q96J94 861 aaKnown RBP12.59□□□□□ -0.39
HDAC6-219ENST00000476625 MTG2Q9H4K7 406 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 MMRN2Q9H8L6 949 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 SUSD2Q9UGT4 822 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 FBXO10Q9UK96 956 aa12.59□□□□□ -0.39
HDAC6-219ENST00000476625 MYLKQ15746 1914 aa12.58□□□□□ -0.39
HDAC6-219ENST00000476625 ZBTB24O43167 697 aaPredicted RBP12.58□□□□□ -0.4
HDAC6-219ENST00000476625 KLRC4O43908 158 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 TSPAN3O60637 253 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 PENKP01210 267 aaPredicted RBP12.58□□□□□ -0.4
HDAC6-219ENST00000476625 PIK3CAP42336 1068 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 MATKP42679 507 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 SGSHP51688 502 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 CLDN10P78369 228 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 STK4Q13043 487 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 STARD3Q14849 445 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 KNOP1Q1ED39 458 aaKnown RBP12.58□□□□□ -0.4
HDAC6-219ENST00000476625 KIF19Q2TAC6 998 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 ZACNQ401N2 412 aa12.58□□□□□ -0.4
HDAC6-219ENST00000476625 PREPLQ4J6C6 727 aaPredicted RBP12.58□□□□□ -0.4
HDAC6-219ENST00000476625 ZNF394Q53GI3 561 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms