RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TRIM67Q6ZTA4 783 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 MCOLN2Q8IZK6 566 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 ADGRG2Q8IZP9 1017 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 VCPIP1Q96JH7 1222 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 SERPINB11Q96P15 392 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.47□□□□□ -0.41
VPS13D-204ENST00000469054 EBF3Q9H4W6 596 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 HPS4Q9NQG7 708 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 GTSE1Q9NYZ3 720 aa12.47□□□□□ -0.41
VPS13D-204ENST00000469054 MYO10Q9HD67 2058 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 TMCO5BA8MYB1 307 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 MSI1O43347 362 aaKnown RBP12.46□□□□□ -0.41
VPS13D-204ENST00000469054 RTN2O75298 545 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 TRUB2O95900 331 aaKnown RBP12.46□□□□□ -0.41
VPS13D-204ENST00000469054 IGLV3-25P01717 112 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 FTLP02792 175 aaPredicted RBP12.46□□□□□ -0.41
VPS13D-204ENST00000469054 KLKB1P03952 638 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 ARSAP15289 507 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 MATKP42679 507 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 NUBP1P53384 320 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 MLLT6P55198 1093 aaPredicted RBP12.46□□□□□ -0.41
VPS13D-204ENST00000469054 CDK17Q00537 523 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 NNTQ13423 1086 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 IER5LQ5T953 404 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 Q6ZNB5 142 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 ARCQ7LC44 396 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 PHLDB2Q86SQ0 1253 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 TAC4Q86UU9 113 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 BBS7Q8IWZ6 715 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 TC2NQ8N9U0 490 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 ADAM32Q8TC27 787 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 PLD4Q96BZ4 506 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 OTUB2Q96DC9 234 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 DCLK3Q9C098 648 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 ISCUQ9H1K1 167 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 ECT2Q9H8V3 914 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 ARHGEF3Q9NR81 526 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 HEBP1Q9NRV9 189 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 RRN3Q9NYV6 651 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS13D-204ENST00000469054 TMEM59LQ9UK28 342 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 CA14Q9ULX7 337 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 ZNF510Q9Y2H8 683 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 A0A0C4DFX4 3053 aa12.46□□□□□ -0.41
VPS13D-204ENST00000469054 ZNF638Q14966 1978 aaKnown RBP12.46□□□□□ -0.41
VPS13D-204ENST00000469054 MUC3AQ02505 3323 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 A0A087X0T9 212 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 SSU72P8A0A1W2PR75 194 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 TCRBV5S1A1TA0A578 114 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 KRBA1A5PL33 1030 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 TMEM221A6NGB7 291 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 OTOL1A6NHN0 477 aaPredicted RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 M0R296 226 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 NFATC1O95644 943 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 IGLV3-27P01718 113 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 FAM228BP0C875 321 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 KRT3P12035 628 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 GLULP15104 373 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 CDC25BP30305 580 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 CORO1AP31146 461 aaKnown RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 GBP1P32455 592 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 FLT3P36888 993 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 EIF4A3P38919 411 aaKnown RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 HARS2P49590 506 aaKnown RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 TBX4P57082 545 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 PITX1P78337 314 aaPredicted RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 PRKCQQ04759 706 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 RING1Q06587 406 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 EIF4EBP2Q13542 120 aaPredicted RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 MLF2Q15773 248 aaPredicted RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 ASTE1Q2TB18 679 aaPredicted RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 ITPRIPL2Q3MIP1 535 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 UNC45BQ8IWX7 931 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 SIX5Q8N196 739 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 CPA6Q8N4T0 437 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 C3orf20Q8ND61 904 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 TTC8Q8TAM2 541 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 ATP2A3Q93084 1043 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 SLC39A13Q96H72 371 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 SHDQ96IW2 340 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 CHP1Q99653 195 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 DDX23Q9BUQ8 820 aaKnown RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 SELENOOQ9BVL4 669 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 C8orf33Q9H7E9 229 aaPredicted RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 METTL5Q9NRN9 209 aaKnown RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 AGO1Q9UL18 857 aaKnown RBP12.45□□□□□ -0.42
VPS13D-204ENST00000469054 STAP1Q9ULZ2 295 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 TLR6Q9Y2C9 796 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 ANAPC1Q9H1A4 1944 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 NCOR1O75376 2440 aa12.45□□□□□ -0.42
VPS13D-204ENST00000469054 OBSL1O75147 1896 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 SIGLEC16A6NMB1 481 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 M0QYT0 321 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 IRAK2O43187 625 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 RRM1P23921 792 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 STARD6P59095 220 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 NR1H3Q13133 447 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 DHCR24Q15392 516 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 CCDC122Q5T0U0 273 aa12.44□□□□□ -0.42
VPS13D-204ENST00000469054 NUGGCQ68CJ6 796 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms